PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.30057s0082.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

TCP

Protein Properties

Length: 409aa MW: 43142.2 Da PI: 6.8599

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.30057s0082.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.4	1.7e-40	52	217	2	121
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq a+pai ++tgt++++a+++ ++s +ss+s+ s++ Bostr.30057s0082.1.p 52 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQHAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPp 140 789******************************************************************99988888888888555556 PP TCP 89 ............................................kaaksaakskksqksaasalnlakesrakarar 121 ++ + +++++++q++ ++ ++ + sr++ r+ Bostr.30057s0082.1.p 141 skslplygalglthhhhhhqhqfdeqgggggafaahttpllgfhHHLQHQHHHHQNQAPVETISDGENFSRKRYRSV 217 66677777777777777777888888899999888888777775444444455555555555555555555555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-40	57	225	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.985	58	112	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MDLSDIRNND GAATTGGGAR QLVDASLTIV PRSTPLEDST LATTSSTAAA ATTTKRSTKD 60 RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQHAEPAIV AATGTGTIPA 120 NFSTLSVSLR SSGSTLSAPP SKSLPLYGAL GLTHHHHHHQ HQFDEQGGGG GAFAAHTTPL 180 LGFHHHLQHQ HHHHQNQAPV ETISDGENFS RKRYRSVDLS KENDDRKQNE SKSLKESETP 240 DPAAPPMWAV APTSRSSGGN TLWMLPVPTT AGNQMDSSSN NTTTAGHRAP MWPFVNSAGG 300 AGGGAGGGAG AATHFMAGTG FSFPMDQYRG SPLQLGSFVA QPQPTQNLGL SMPDSNLGML 360 AALNVAYSRG GNANANAEQA NNAVEHQEKP QQSDHDEDSR DDNSNSSE*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MDLSDIRNND GAATTGGGAR QLVDASLTIV PRSTPLEDST LATTSSTAAA ATTTKRSTKD  60
RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQHAEPAIV AATGTGTIPA  120
NFSTLSVSLR SSGSTLSAPP SKSLPLYGAL GLTHHHHHHQ HQFDEQGGGG GAFAAHTTPL  180
LGFHHHLQHQ HHHHQNQAPV ETISDGENFS RKRYRSVDLS KENDDRKQNE SKSLKESETP  240
DPAAPPMWAV APTSRSSGGN TLWMLPVPTT AGNQMDSSSN NTTTAGHRAP MWPFVNSAGG  300
AGGGAGGGAG AATHFMAGTG FSFPMDQYRG SPLQLGSFVA QPQPTQNLGL SMPDSNLGML  360
AALNVAYSRG GNANANAEQA NNAVEHQEKP QQSDHDEDSR DDNSNSSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.30057s0082.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079131	0.0	AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence.
GenBank	AC079604	0.0	AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence.
GenBank	AY081344	0.0	AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds.
GenBank	BT008493	0.0	BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020891334.1	0.0	transcription factor TCP8
Swissprot	Q9C518	0.0	TCP8_ARATH; Transcription factor TCP8
TrEMBL	D7KY84	0.0	D7KY84_ARALL; Uncharacterized protein (Fragment)
STRING	Bostr.30057s0082.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-163	TCP family protein

Link Out ? help Back to Top
Phytozome	Bostr.30057s0082.1.p

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]