PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0060.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CAMTA
Protein Properties Length: 924aa    MW: 104635 Da    PI: 7.1427
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11621.1e-50301463118
                  CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                           +e  +rwl+++ei+a+L n++ +++  ++ + pksg+++L++rk++r+frkDG+swkkkkdgkt++E+he+LKvg+ e +++yYah+++
  Bostr.30275s0060.1.p  30 DEaYTRWLRPNEIHALLCNHHFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHSWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDD 118
                           45589************************************************************************************ PP

                  CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                           nptf rrcywlL++++e+ivlvhy+e++
  Bostr.30275s0060.1.p 119 NPTFVRRCYWLLDKSKEHIVLVHYRETH 146
                           *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.13425151IPR005559CG-1 DNA-binding domain
SMARTSM010764.2E-7228146IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4432144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.68E-13374460IPR014756Immunoglobulin E-set
CDDcd002045.48E-14560670No hitNo description
PfamPF127963.1E-7560640IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-15561673IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-15569681IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.708578643IPR020683Ankyrin repeat-containing domain
SMARTSM002482.7E-6611640IPR002110Ankyrin repeat
PROSITE profilePS5008811.808611643IPR002110Ankyrin repeat
PROSITE profilePS500966.595760786IPR000048IQ motif, EF-hand binding site
SMARTSM00015260775797IPR000048IQ motif, EF-hand binding site
SMARTSM000154.7E-4798820IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.651799823IPR000048IQ motif, EF-hand binding site
PfamPF006126.4E-4801820IPR000048IQ motif, EF-hand binding site
SMARTSM000156.8875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.114876905IPR000048IQ motif, EF-hand binding site
PfamPF006120.22877897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 924 aa     Download sequence    Send to blast
MSGVGSGKLI GSEIHGFHTL QDLDIQTMLD EAYTRWLRPN EIHALLCNHH FFTINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHSWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP  120
TFVRRCYWLL DKSKEHIVLV HYRETHEVQA APATPGNSYS SSISDHLSPK LVAEDINSDV  180
RNTCNTGFDV RSNSLGARNH EIRLHEINTL DWDELLVPAD ISNQSHPTEE DMLYLTGQLQ  240
TAPRGSAKQG NHLAGYNGSV DIPSFPGLED PVYQNNNSCG AGEFSSQHMH CGVEPNLQRR  300
DSSATVADQP GDALLNNGYG SQDSFGRWVN NFISDSPGSV DDPSLEAVCT PGQESSTTPA  360
GLHSHSNIPE QVFNITDVSP AWAYSTEKTK ILVTGFFHDS FQHFGISNLF CICGELRVPA  420
EFLQMGVYRC FLPPQSPGVV NLYLSVDGNK PISQLFSFEH RSVPVIETAI PQDDQLYMWE  480
EFEFQVRLAH LLFTSSNKIS ILTSKISPDN LQEAKKLASR TSHLLNSWAY LMKSIQANEV  540
PFDQARDHLF ELTLKNRLKE WLLEKVIENR NTKEYDSKGL GVIHLCAILG YTWSILLFSW  600
ANISLDFRDK HGWTALHWAA YYGREKMVAA LLSAGARPNL VTDPTKEFLG GCTAADLAQQ  660
KGYEGLAAFL AEKCLVAQFK DMQMAGNISG NLETIKAEKS SNPGNANEEE QSLKDTLAAY  720
RTAAEAAARI QGAFREHELK VRSSAVRFAS KEEEAKNIVA AMKIQHAFRN FETRRKIAAA  780
ARIQYRFQTW KMRREFLNMR NKAIRIQAAF RGFQVRRQYQ KITWSVGVLE KAILRWRLKR  840
KGFRGLQVSQ PEEKEGSDEE VEEFYKTSQK QAEERLERSV VKVQAMFRSK KAQQDYRRIK  900
LAHEEAELEY DGMQEHDQMA MES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0060.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1282950.0AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282550.10.0calmodulin-binding transcription activator 5 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLR0GWD20.0R0GWD2_9BRAS; Uncharacterized protein
STRINGBostr.30275s0060.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]