PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0246.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 174aa    MW: 18831.7 Da    PI: 4.82
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0246.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-054668123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C + F++   L  H+++H
  Bostr.30275s0246.1.p 46 YTCNFCRREFRSAQALGGHMNVH 68
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.34E-74372No hitNo description
Gene3DG3DSA:3.30.160.607.1E-44470IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-54669IPR007087Zinc finger, C2H2
SMARTSM003550.00734668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1984673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MNGGAWMWNP NKIEELEEDD ESWEVKAFEQ DTKGNISGTT WPPRSYTCNF CRREFRSAQA  60
LGGHMNVHRR DRASSRAHQG PIAAAGARSS GGTLLNSCVP PLSTTTLIIQ STASNTEGLS  120
HFCQLQNPSG IFGNSGDTVN LYGDDESIGS MKETTGTSMD ELDLELRLGH NPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-134168229superman protein
2l1o_A1e-134168229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0246.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615471e-177AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47.
GenBankBT0108281e-177BT010828.1 Arabidopsis thaliana At4g17810 mRNA, complete cds.
GenBankBT0113011e-177BT011301.1 Arabidopsis thaliana At4g17810 gene, complete cds.
GenBankCP0026871e-177CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankHM4533341e-177HM453334.1 Arabidopsis lyrata palmate-like pentafoliata 1 transcription factor (PALM1) gene, complete cds.
GenBankZ973441e-177Z97344.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001328418.11e-114C2H2 and C2HC zinc fingers superfamily protein
TrEMBLA0A1P8B4M51e-113A0A1P8B4M5_ARATH; C2H2 and C2HC zinc fingers superfamily protein
STRINGBostr.30275s0246.1.p1e-127(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-101C2H2 family protein