PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.30275s0303.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

HRT-like

Protein Properties

Length: 205aa MW: 22949 Da PI: 7.9707

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.30275s0303.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	63.3	3.5e-20	172	202	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG++l++GsvC++ Pv+gRKRCeeHKGmRi Bostr.30275s0303.1.p 172 ICGIKLDNGSVCEKVPVEGRKRCEEHKGMRI 202 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MYLFFSRFSK LSARRGNSCK ICDYRDYCSG SARVPVAHAP DDHHDLDFWN VKQALSAQFL 60 AFAAAEAKQP KWWEKKAGPG IPCEVRFIRE DYCSGSARVP VAHAPDDHHD LDFWNVKQAL 120 SVQFLAFAAA EAKQPKWWEK KAGPGIPCEV HFIREDHGSS ENVQSATISQ IICGIKLDNG 180 SVCEKVPVEG RKRCEEHKGM RITS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.30275s0303.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL049171	1e-44	AL049171.1 Arabidopsis thaliana DNA chromosome 4, BAC clone (ESSA project).
GenBank	AL049483	1e-44	AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project).
GenBank	AL161564	1e-44	AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.
GenBank	CP002687	1e-44	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Y10013	1e-44	Y10013.1 A.thaliana mRNA for putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Bostr.30275s0303.1.p	1e-151	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26170.1	6e-22

Link Out ? help Back to Top
Phytozome	Bostr.30275s0303.1.p