PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.30275s0364.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

HSF

Protein Properties

Length: 237aa MW: 28568.4 Da PI: 10.6323

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.30275s0364.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	27.5	8.3e-09	4	54	38	97
HHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 38 kkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 k +L+++Fk++n++ F Ln+ gF+k+++ + weF++++F +g+ +l+++i Bostr.30275s0364.1.p 4 KYLLQRFFKTNNLEFFFSYLNIHGFRKIESGK---------WEFANDNFVRGQPHLINNI 54 6789**********************9988.........**************998 PP
2	HSF_DNA-bind	33.5	1.1e-10	92	143	4	55
HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHH CS HSF_DNA-bind 4 kklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvR 55 +k ye+++d + + +isws++g+sf++++++ef k++L ++ ++ F Bostr.30275s0364.1.p 92 HKFYEMVDDTSSDAIISWSQSGKSFIIWNPREFCKDLLRRFSSSLHIPLFFH 143 89*********************************99988765555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.1E-4	3	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.21E-11	3	54	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.9E-10	3	54	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	7.1E-9	4	54	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	1.7E-6	88	171	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.72E-11	91	160	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.1E-12	91	148	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.4E-9	91	164	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
KNSKYLLQRF FKTNNLEFFF SYLNIHGFRK IESGKWEFAN DNFVRGQPHL INNIISYIIE 60 QRVLVDQRMD MIKARQLLML QVKEVEDQWP PHKFYEMVDD TSSDAIISWS QSGKSFIIWN 120 PREFCKDLLR RFSSSLHIPL FFHKLKWEFA NDKFCSGSTS PYGIIRSNHR EKNDQLRKKY 180 ERVKKMREAR DLFKLQVKEM LDMRKKMRKA ARKKMKKAKE VKEHEVRLQH IGLCKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.30275s0364.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493684	4e-51	AB493684.1 Arabidopsis thaliana At4g18870 mRNA for hypothetical protein, partial cds, clone: RAAt4g18870.
GenBank	AL021711	4e-51	AL021711.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F13C5 (ESSA project).
GenBank	AL161549	4e-51	AL161549.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49.
GenBank	CP002687	4e-51	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002870020.1	1e-100	heat stress transcription factor C-1
TrEMBL	D7M9E4	3e-99	D7M9E4_ARALL; Predicted protein
STRING	Bostr.30275s0364.1.p	1e-175	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20171	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18870.1	2e-79	HSF family protein

Link Out ? help Back to Top
Phytozome	Bostr.30275s0364.1.p