PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.3148s0106.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 244aa MW: 28325.3 Da PI: 9.6055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3148s0106.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.6e-11	90	139	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+r h + Er RR++ ++++ L +llP a +K++K +i+ekAv+ I +Lq Bostr.3148s0106.1.p 90 RCRRHMMKERTRREKQKQSYLALHSLLPFA-----TKNNKNSIVEKAVDEIGKLQ 139 6788************************.....9*************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-11	83	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.87E-9	87	143	No hit	No description
PROSITE profile	PS50888	12.411	89	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-7	90	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-7	93	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-5	95	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MDNFFLDSVC QEEDTLWDLL ADDISGYDDK NVSVPNRSAF RSYVKDTEQR MMSSSSEISS 60 SKVNVKKRMV NLLRKNWDEK KNAVAPEKER CRRHMMKERT RREKQKQSYL ALHSLLPFAT 120 KNNKNSIVEK AVDEIGKLQR LKKELERRTK VIEAKSANDG HDDMSETMVR FNLQKPSSGL 180 DSMVEVLHCL KSMGTKLKTV HANFSPHMFS ATMNIETQIS GEEVEKRVER RLQENDWKFL 240 FLT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3148s0106.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010494343.1	1e-148	PREDICTED: transcription factor bHLH92-like
Swissprot	Q9FIX5	1e-138	BH092_ARATH; Transcription factor bHLH92
TrEMBL	D7MXG4	1e-142	D7MXG4_ARALL; Basic helix-loop-helix family protein
STRING	Bostr.3148s0106.1.p	1e-180	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-136	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.3148s0106.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]