PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0146.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 326aa    MW: 37391.9 Da    PI: 6.7325
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0146.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.4e-30111167258
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                          dDgy+WrKYGqK++k+s++prsYY+Ct + C++kk+vers ++p++ +itYeg H h
  Bostr.3148s0146.1.p 111 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDEPNTYIITYEGFHFH 167
                          8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-28104167IPR003657WRKY domain
PROSITE profilePS5081126.418105170IPR003657WRKY domain
SuperFamilySSF1182901.31E-25107168IPR003657WRKY domain
SMARTSM007742.1E-35110169IPR003657WRKY domain
PfamPF031061.5E-24111167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAEEELSEWR RRYGNDAVED LFVNDLPLFF LPQEQHHWLM PTEDSITNKF VSSTLYSGPR  60
IQDIANALAV VELQTHPVRE LYRSTVPLLE RSTLSKLDRY TLKVKSNGMC DDGYKWRKYG  120
QKSIKNSPNP RSYYKCTNPI CNAKKQVERS IDEPNTYIIT YEGFHFHYTY PFFLPDKTHW  180
PNKKTKILKH DAQDKPHLDI NKTSQTQEEI KQAHLTEPAY QNYPAHKAQE NTPANLEDEL  240
FFPVDQCRRQ QGLLEDVVAP AIKTTTARDS VLAASWSSLS SYTSSSCSSC RTSSPPLSPS  300
SLCWSPNVNI GFSDEILELI GYHNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-191091671674Probable WRKY transcription factor 4
2lex_A5e-191091671674Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3148s0146.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1764430.0AK176443.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL24-21-D20.
GenBankBT0104240.0BT010424.1 Arabidopsis thaliana At5g43290 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481875.11e-174PREDICTED: probable WRKY transcription factor 49
SwissprotQ9FHR71e-153WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLD7MP901e-161D7MP90_ARALL; Uncharacterized protein
STRINGBostr.3148s0146.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-155WRKY DNA-binding protein 49