PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0148.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family SBP
Protein Properties Length: 415aa    MW: 46093.6 Da    PI: 8.4145
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0148.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.32.8e-40178253277
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  Bostr.3148s0148.1.p 178 CQVEGCNIDLSSAKDYHRKHRICENHSKFPKVFVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 253
                          **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-32171239IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.667175252IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-38176256IPR004333Transcription factor, SBP-box
PfamPF031105.6E-31178251IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MECNAKPSLQ WEWENLISFG TSSAEIPRKL KPMEWEIDGF DCTSLYSSSF AALAYGGSSG  60
SDIAHAFSKS SKSTSISSSS AEVRTYNFTS EAGEGLPGEL GSSEEFAKGI DTSPSLELSF  120
GSGDPVVGLK LGKRTYFEDF WEVENAKGLG LPVSLASSSA SPVKKSKPIS QRLQTPHCQV  180
EGCNIDLSSA KDYHRKHRIC ENHSKFPKVF VSGVERRFCQ QCSRFHCLSE FDEKKRSCRR  240
RLSDHNARRR KPNPGRTYDG KPQVDFVWNR FALIHPRREE NLIWPSSKPV PSRGLMPQPT  300
KTETSNMLFT EHCGFGLLDP KTRTARAELF SKEKVTISSH MGASQYLDGA LSLLSNSTSW  360
VSSDQPRRFS LDHHPTSNLQ SVAHRSVNQL NTVSSYWQPD PPAVEGQTTH IEMG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271782511184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233250KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3148s0148.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116250.0AJ011625.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481881.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010481882.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010481883.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010481884.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLD7MP970.0D7MP97_ARALL; Uncharacterized protein
STRINGBostr.3148s0148.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2