PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0150.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YC
Protein Properties Length: 129aa    MW: 14349.8 Da    PI: 10.2674
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC50.54.4e-1610891997
                NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                          e+P+ r+kki+k d+d+++i +ea  l++ + elf+  l+ +s + + e+kr+t+    + +av+r + + dfl+d  p
  Bostr.3148s0150.1.p 10 PEFPVGRVKKIMKLDKDINKINSEALHLVTYSTELFLHFLAEKSAVVTAEKKRKTVTLDHLRTAVKRHQpTCDFLLDSLP 89
                         589**************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.47E-198100IPR009072Histone-fold
PfamPF008082.4E-201174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.3E-211289IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MAEEESSIRP EFPVGRVKKI MKLDKDINKI NSEALHLVTY STELFLHFLA EKSAVVTAEK  60
KRKTVTLDHL RTAVKRHQPT CDFLLDSLPL PAPPLPHTKT VKVPPPPPVG TRRIEDFFTK  120
GKAKADSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3148s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0170705e-83AB017070.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNL12.
GenBankAB4937745e-83AB493774.1 Arabidopsis thaliana At5g43250 mRNA for hypothetical protein, partial cds, clone: RAAt5g43250.
GenBankCP0026885e-83CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199139.12e-73nuclear factor Y, subunit C13
TrEMBLA0A178UGE21e-72A0A178UGE2_ARATH; NF-YC13
STRINGBostr.3148s0150.1.p2e-87(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-59nuclear factor Y, subunit C13