PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.3148s0154.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

WOX

Protein Properties

Length: 105aa MW: 11921.8 Da PI: 6.7978

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3148s0154.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.1	2.2e-11	29	59	31	57
HHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 31 eeLAkkl....gLterqVkvWFqNrRakekk 57 +e++++l ++te++V++WFqNrRa+ k+ Bostr.3148s0154.1.p 29 REITTELsehrHITENNVYNWFQNRRARSKR 59 55555555555******************97 PP
2	Wus_type_Homeobox	46.9	6.5e-16	22	61	26	65
Wus_type_Homeobox 26 tPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 t ++e ++it+eL+e+ +i+++NV++WFQNr+aR+++kq Bostr.3148s0154.1.p 22 TKSAEDHREITTELSEHRHITENNVYNWFQNRRARSKRKQ 61 66788899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-9	9	64	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.54E-9	24	63	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.544	24	60	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-8	28	59	IPR001356	Homeobox domain
CDD	cd00086	4.51E-6	34	61	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MDSNDDATSD SREHLQGRKW NTKSAEDHRE ITTELSEHRH ITENNVYNWF QNRRARSKRK 60 QPHKTTMIGQ SNDAAVTTEE RSCGDSGGFG SYQHILFPSS DLGQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	60	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3148s0154.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306476.1	4e-36	WUSCHEL-related homeobox 14
Swissprot	Q9LM84	8e-36	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	R0IAB3	8e-35	R0IAB3_9BRAS; Uncharacterized protein
STRING	Bostr.3148s0154.1.p	3e-73	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	3e-38	WUSCHEL related homeobox 14

Link Out ? help Back to Top
Phytozome	Bostr.3148s0154.1.p

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]