PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.3148s0158.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 224aa MW: 25500.7 Da PI: 7.0594

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3148s0158.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	148	188	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L++l+P+ +K++ +++Le Av+Y+k Lq Bostr.3148s0158.1.p 148 RKRRERINDRLKTLQRLVPNG-----TKVDISTMLEDAVHYVKFLQ 188 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.773	138	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-12	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-14	144	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-12	144	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.15E-12	147	192	No hit	No description
Pfam	PF00010	8.3E-9	148	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MENEAFVDGE LESLLGMFNF EQCSSDESSF YNAPNETDVF SSDDFFPFGK ILQRNYPSFC 60 DGSNHQTNLY VDSRQELMKQ RKKQKLSPER NLVTEPNTAW RDGQTPSSFN SSDDEKALGL 120 AANTSKSLKG KAKPNKWIAS DPQSLYARKR RERINDRLKT LQRLVPNGTK VDISTMLEDA 180 VHYVKFLQLQ IKLLSSDDLW MYAPLAHNGL NMGLHHNLLS RLM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3148s0158.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023030	2e-77	AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5.
GenBank	CP002688	2e-77	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010494289.1	1e-143	PREDICTED: transcription factor bHLH139
Swissprot	Q3E7L7	1e-142	BH139_ARATH; Transcription factor bHLH139
TrEMBL	A0A178UKI5	1e-140	A0A178UKI5_ARATH; Uncharacterized protein
STRING	Bostr.3148s0158.1.p	1e-166	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4132	22	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43175.1	1e-129	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.3148s0158.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]