PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0159.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 198aa    MW: 21495 Da    PI: 8.6897
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0159.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-057597123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC+ C+k+F++   L  H  +H
  Bostr.3148s0159.1.p 75 YKCSVCDKTFPSYQALGGHKASH 97
                         9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-975140No hitNo description
PfamPF139122.8E-147599IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7647597IPR007087Zinc finger, C2H2
SMARTSM003550.00257597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
PfamPF139121.8E-10118142IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016118145IPR007087Zinc finger, C2H2
SMARTSM003551.2118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MALEALNSPR LVEDSTRSFH GVEKWTKGKK RSKRSRSDHH DHCLTEEEYL AFCLVLLARD  60
GGDLDSVTAA ERPGYKCSVC DKTFPSYQAL GGHKASHRSL FGSGDNDKLT PSTAVKSHVC  120
SICFKSFATG QALGGHKRCH YEGNRNGGVS NSEGGGSTSH VSSNSHRGFD LNITPVREFP  180
PDDEVMSPMA TKKPRLK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors. {ECO:0000269|PubMed:15333755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3148s0159.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold and heat. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442062.11e-115PREDICTED: zinc finger protein AZF3-like
SwissprotQ9SSW01e-106AZF3_ARATH; Zinc finger protein AZF3
TrEMBLR0GT271e-112R0GT27_9BRAS; Uncharacterized protein
STRINGBostr.3148s0159.1.p1e-145(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.12e-88zinc-finger protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]