PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0214.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ZF-HD
Protein Properties Length: 244aa    MW: 27942.7 Da    PI: 8.8924
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0214.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.52.8e-2762115359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          k +Y eC+kNhAa +G++a+DGCgEf+++    g++++l+CaACgCHRnFHR e  +
  Bostr.3148s0214.1.p  62 KPHYGECRKNHAAGIGTNAYDGCGEFVTT---GGEKDSLNCAACGCHRNFHREELIT 115
                          678*************************8...5668****************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015661.0E-2564112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.4E-2264112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1965116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.62165112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.41E-11177241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-19178241IPR009057Homeodomain-like
TIGRFAMsTIGR015655.7E-30183239IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDEIKPKKED KSKRRRTATA ICRETGDHVH YLPPTRKTKS KPTRTHHAPS PILESIFQVT  60
TKPHYGECRK NHAAGIGTNA YDGCGEFVTT GGEKDSLNCA ACGCHRNFHR EELITENGVT  120
ETVLEVLKIS SYQFRQIFCS PYGGGKSKVK KEEEEKEISG GDRIVVVDRL KGEDFVEEAG  180
RVKRLKTKFT AEQTEKMRDY AEKLRWKVRP EMRNEVEEFC VEIGVNRKNF MIWINNHKDK  240
THE*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3148s0214.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865484.11e-122zinc-finger homeodomain protein 13
SwissprotQ9FMY71e-121ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLD7MRF41e-121D7MRF4_ARALL; ATHB27
STRINGBostr.3148s0214.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.11e-113homeobox protein 27