PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.3148s0222.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 230aa MW: 26251.1 Da PI: 10.3699

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3148s0222.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.3	2.1e-16	130	217	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp +f+++ k ++ +tl de+g+++e +i ++++ l++GW +F+ a++L gD++vF+l++ + f Bostr.3148s0222.1.p 130 FVKSMLQSHVSGGFWLGLPVHFCRSQLRK--QDCVITLIDEEGEEFETIYIAKRTG----LSGGWMGFAVAHNLAYGDTLVFELVRPTAF 213 89*******************988555..4558***********555555....**********************987888 PP ..EEEE CS B3 91 elvvkv 96 +v + Bostr.3148s0222.1.p 214 --KVYI 217 ..5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.53E-22	124	220	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.7E-18	125	219	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.60E-22	129	219	No hit	No description
PROSITE profile	PS50863	11.801	130	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-13	130	217	IPR003340	B3 DNA binding domain
SMART	SM01019	5.6E-22	130	221	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVVAKQSNYE EFRMKRVEEN KKRMEALNLT KLSQNLNPTS VKTSPMKKRC IPRTPEKQMV 60 IVRRSSRLSN SSSTPVYREV DLQRVQIRRR VVSKRRDLSN RVYVSEEIRD EAISRAEKFQ 120 ADLGSDYSSF VKSMLQSHVS GGFWLGLPVH FCRSQLRKQD CVITLIDEEG EEFETIYIAK 180 RTGLSGGWMG FAVAHNLAYG DTLVFELVRP TAFKVYITRV GSSGESSKI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3148s0222.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007647	3e-61	AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBank	CP002688	3e-61	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010481961.1	1e-142	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Swissprot	Q9FMZ4	1e-119	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A2H1ZE86	1e-126	A0A2H1ZE86_ARATH; AP2/B3-like transcriptional factor family protein
STRING	Bostr.3148s0222.1.p	1e-169	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-121	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.3148s0222.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]