PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0250.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family BBR-BPC
Protein Properties Length: 342aa    MW: 38089.1 Da    PI: 9.7545
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind410.42.2e-12513411301
            GAGA_bind   1 mdddgsre..rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 
                          mdd g+re  r+k+       ++ +s+k     q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+a
  Bostr.3148s0250.1.p   1 MDDGGHREngRHKAAQGqwlmQHqPSMK-----QVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTA 85 
                          9999998878888733323332234444.....********************************************************* PP

            GAGA_bind  84 lllvensla.......salpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
                          l+++ens++       s++p+g+q+++g+k++++ +++++     pql+++a+e+re+e ++ lp++  a +a e++k+k+++r k+pk+
  Bostr.3148s0250.1.p  86 LQYRENSMVtaaaanmSSCPPGCQISRGVKHMHHPHMHHHhqhhiPQLTENAYETREMEPNDGLPTSPPAGSALESAKPKRGKRVKDPKA 175
                          *******9999***999********************7667999********************************************** PP

            GAGA_bind 162 kkakkkkkksekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWG 226
                          +++++++k+++k+++kvkkes+d+                         sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWG
  Bostr.3148s0250.1.p 176 TTQTAANKRGPKNQRKVKKESEDDLskimfvktahdyteensskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWG 265
                          *********************984358********************************88***************************** PP

            GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                          nGGWqS+CCttt+S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
  Bostr.3148s0250.1.p 266 NGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 341
                          **************************************************88***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.7E-1031341IPR010409GAGA-binding transcriptional activator
SMARTSM012268.7E-1801341IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDDGGHRENG RHKAAQGQWL MQHQPSMKQV MSIIAERDAA IQERNLAISE KKAAIAERDM  60
AFLQRDTAIA ERNNAIMERD SALTALQYRE NSMVTAAAAN MSSCPPGCQI SRGVKHMHHP  120
HMHHHHQHHI PQLTENAYET REMEPNDGLP TSPPAGSALE SAKPKRGKRV KDPKATTQTA  180
ANKRGPKNQR KVKKESEDDL SKIMFVKTAH DYTEENSSKH ILIGSKSDWK SQEMVGLNQV  240
VYDETTMPPP VCSCTGVLRQ CYKWGNGGWQ SSCCTTTLSM YPLPALPNKR HARVGGRKMS  300
GSAFNKLLSR LAAEGHHDLS NPVDLKDHWA KHGTNRYITI K*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3148s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0885640.0AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence.
GenBankAY3805720.0AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442173.10.0PREDICTED: protein BASIC PENTACYSTEINE6
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLR0GAL80.0R0GAL8_9BRAS; Uncharacterized protein
STRINGBostr.3148s0250.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.10.0basic pentacysteine 6