PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0250.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family BBR-BPC
Protein Properties Length: 338aa    MW: 37530.5 Da    PI: 9.7545
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0250.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind412.64.6e-12613371301
            GAGA_bind   1 mdddgsre..rnkgyyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllv 87 
                          mdd g+re  r+k+   ++ +s+k     q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+al+++
  Bostr.3148s0250.2.p   1 MDDGGHREngRHKAAQGQHqPSMK-----QVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTALQYR 85 
                          9*****988999995555548898.....************************************************************* PP

            GAGA_bind  88 ensla.......salpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak 165
                          ens++       s++p+g+q+++g+k++++ +++++     pql+++a+e+re+e ++ lp++  a +a e++k+k+++r k+pk+++++
  Bostr.3148s0250.2.p  86 ENSMVtaaaanmSSCPPGCQISRGVKHMHHPHMHHHhqhhiPQLTENAYETREMEPNDGLPTSPPAGSALESAKPKRGKRVKDPKATTQT 175
                          ***9999***999********************7667999************************************************** PP

            GAGA_bind 166 kkkkksekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGW 230
                          +++k+++k+++kvkkes+d+                         sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGW
  Bostr.3148s0250.2.p 176 AANKRGPKNQRKVKKESEDDLskimfvktahdyteensskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGW 265
                          *****************984358********************************88********************************* PP

            GAGA_bind 231 qSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                          qS+CCttt+S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
  Bostr.3148s0250.2.p 266 QSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 337
                          **********************************************88***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062176.6E-1021337IPR010409GAGA-binding transcriptional activator
SMARTSM012261.1E-1731337IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDDGGHRENG RHKAAQGQHQ PSMKQVMSII AERDAAIQER NLAISEKKAA IAERDMAFLQ  60
RDTAIAERNN AIMERDSALT ALQYRENSMV TAAAANMSSC PPGCQISRGV KHMHHPHMHH  120
HHQHHIPQLT ENAYETREME PNDGLPTSPP AGSALESAKP KRGKRVKDPK ATTQTAANKR  180
GPKNQRKVKK ESEDDLSKIM FVKTAHDYTE ENSSKHILIG SKSDWKSQEM VGLNQVVYDE  240
TTMPPPVCSC TGVLRQCYKW GNGGWQSSCC TTTLSMYPLP ALPNKRHARV GGRKMSGSAF  300
NKLLSRLAAE GHHDLSNPVD LKDHWAKHGT NRYITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3148s0250.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0885640.0AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence.
GenBankAY3805720.0AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442173.10.0PREDICTED: protein BASIC PENTACYSTEINE6
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLR0GR440.0R0GR44_9BRAS; Uncharacterized protein
STRINGBostr.3148s0250.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.20.0basic pentacysteine 6