PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3288s0193.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 521aa    MW: 59383.6 Da    PI: 6.9765
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3288s0193.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-093654021954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+++e+  L+k++gL+++qV +WF N R +
  Bostr.3288s0193.1.p 365 FEHflHPYPKESEKIMLSKQTGLSKNQVANWFINARVR 402
                          665559******************************88 PP
2BELL124.93.2e-40228299172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+v+glg+akpYts+Al++iSrhFrcL+dai+eqi
  Bostr.3288s0193.1.p 228 ERQELQNKKNKLLTMVDEVDKRYNQYHHQMEALASSFEMVTGLGAAKPYTSVALNRISRHFRCLRDAIKEQI 299
                          79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-50161297IPR006563POX domain
PfamPF075265.8E-48167295IPR006563POX domain
PROSITE profilePS5007112.066343406IPR001356Homeobox domain
SMARTSM003891.9E-9346410IPR001356Homeobox domain
CDDcd000864.09E-11346407No hitNo description
SuperFamilySSF466893.12E-17347413IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-28349412IPR009057Homeodomain-like
PfamPF059201.8E-17363402IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAVYYPNSVG MRSLYQESIY LNEQQQQQAS SSSAASFSEI VSGDVRNNEM VFIPPTSHVA  60
VNGNVTVSSN DLSFHGGGLS LSLGNQIQSA VSVSPFQYHY QNLSNQLNYN NPNASTMSDE  120
NGKSLSGHHH HHQHHSDQMI PSSGYNNNGV GFFNNYRYET SGFVSSVLRS RYLKPTQQLL  180
DEVVSVRKDL KLGNKKMKND KGQDFQNGSS DNITEDEKSQ SQELSPSERQ ELQNKKNKLL  240
TMVDEVDKRY NQYHHQMEAL ASSFEMVTGL GAAKPYTSVA LNRISRHFRC LRDAIKEQIQ  300
VIRGKLGERE TSDEQGERIP RLRYLDQRLR QQRALHQQLG MVRPAWRPQR GLPENSVSIL  360
RAWLFEHFLH PYPKESEKIM LSKQTGLSKN QVANWFINAR VRLWKPMIEE MYKEEFGDSE  420
LLSNSNQDNN KMQETSQLKH EESSSQKQNQ GNNNNIAYTS DAEENLVFAD PKPDRASTGE  480
YDSLMNYHGF GIDDYNRYVG LGNQQDGRFS NPHQLHDFVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15352410563Homeobox protein Meis2
3k2a_B1e-15352410563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3288s0193.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3530930.0AF353093.1 Arabidopsis thaliana BEL1-like homeodomain 3 (BLH3) mRNA, complete cds.
GenBankAY0852780.0AY085278.1 Arabidopsis thaliana clone 142443 mRNA, complete sequence.
GenBankAY5984520.0AY598452.1 Arabidopsis thaliana BEL1-like homeodomain 3 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302135.10.0BEL1-like homeodomain protein 3
SwissprotQ9FWS90.0BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLR0IEB00.0R0IEB0_9BRAS; Uncharacterized protein
STRINGBostr.3288s0193.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38201959
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.20.0BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]