PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3359s0006.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 186aa    MW: 21150.4 Da    PI: 4.6261
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3359s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-192068355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr++k +g+Wv+eIr+    gk++r++lg++ tae+Aa+a++aa++ l+g
  Bostr.3359s0006.1.p 20 YRGVRRRK-WGKWVSEIRES---GKKTRIWLGSYETAEMAAAAYDAAALHLRG 68
                         9****998.**********3...467*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-301977IPR001471AP2/ERF domain
SMARTSM003804.3E-341982IPR001471AP2/ERF domain
PROSITE profilePS5103222.7611976IPR001471AP2/ERF domain
PfamPF008471.4E-131968IPR001471AP2/ERF domain
CDDcd000187.23E-182078No hitNo description
SuperFamilySSF541716.54E-222077IPR016177DNA-binding domain
PRINTSPR003672.7E-102031IPR001471AP2/ERF domain
PRINTSPR003672.7E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MENNYVSQRE DRFSVDQVSY RGVRRRKWGK WVSEIRESGK KTRIWLGSYE TAEMAAAAYD  60
AAALHLRGRG TTLNFPELAD SFPRPESSSP EHIQAAAQEA ALMVKPAGRS TEPALESGQG  120
LSRVGLSPDQ IQAINEFPLD SPRMGWMQDL EVTDYEELYG RFFGQYDRDE FFEMQQLQSI  180
WESNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1619771473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3359s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461198.11e-111PREDICTED: ethylene-responsive transcription factor ERF022
RefseqXP_010478800.11e-111PREDICTED: ethylene-responsive transcription factor ERF022
RefseqXP_010499915.11e-111PREDICTED: ethylene-responsive transcription factor ERF022
RefseqXP_019098530.11e-111PREDICTED: ethylene-responsive transcription factor ERF022
SwissprotQ9LQ281e-107ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLR0IEL81e-107R0IEL8_9BRAS; Uncharacterized protein
STRINGBostr.3359s0006.1.p1e-135(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-108ERF family protein