PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3359s0057.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 128aa    MW: 14937.7 Da    PI: 6.2697
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3359s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind60.25.6e-191595291
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
                         F kkly++++d+++++++sws++g+sf+v++e+ef ++vLp++ + +++a F+  L   gFkk+++e+         we+ ++ F +g+ 
  Bostr.3359s0057.1.p 15 FRKKLYKMVDDPSTDSVVSWSDSGKSFIVWNETEFCRDVLPRFSQYKEMAPFISRLTRMGFKKIESEH---------WEYGNDDFVRGHP 95
                         889**************************************************************999.........9999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-241096IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-2611104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-221496IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.8E-191596IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-101538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-105365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-106678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MDRDSSNPIH NSRYFRKKLY KMVDDPSTDS VVSWSDSGKS FIVWNETEFC RDVLPRFSQY  60
KEMAPFISRL TRMGFKKIES EHWEYGNDDF VRGHPEPEVD LTPEEVSARL KELASSLRKT  120
QADRVQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-1411872599Heat shock factor protein 1
5d5v_B2e-1411872599Heat shock factor protein 1
5d5v_D2e-1411872599Heat shock factor protein 1
5d5w_B2e-1415100493Putative transcription factor
5d5x_B2e-1415100493Putative transcription factor
5d5x_E2e-1415100493Putative transcription factor
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3359s0057.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873596.22e-29heat stress transcription factor A-4a
TrEMBLR0GQ123e-48R0GQ12_9BRAS; Uncharacterized protein
STRINGBostr.3359s0057.1.p2e-90(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.13e-26HSF family protein