PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3359s0141.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 387aa    MW: 40782.8 Da    PI: 6.5226
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3359s0141.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.71e-22290352163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN++L+ e+++lk ++++l +e+
  Bostr.3359s0141.1.p 290 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNGENSTLRAEINKLKSQYEELLAEN 352
                          89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-271106IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.0E-40145266No hitNo description
Gene3DG3DSA:1.20.5.1703.6E-18282348No hitNo description
SMARTSM003386.0E-21290354IPR004827Basic-leucine zipper domain
PfamPF001708.1E-21290352IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.955292355IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-11293349No hitNo description
CDDcd147028.94E-25295345No hitNo description
PROSITE patternPS000360297312IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGSSEMEKSG KEKEPKTPPP SSSSSAPATA ISQEPSSAAS VGMATQDWSG FQAYSPMPPH  60
GYVASSPQPH PYMWGVQHMM PPYGTPPHPY VAMYPPGGMY AHPSLPPGSY PYSPYAMPSP  120
NGMAEASGNT GSGIEGDAKQ SEVKEKLPIK RSKGSLGSLN MIIGKNNETG KASGASPNGA  180
CSKSAESASD GSSEGSDANS QNDSGSRHNG KDGETASESG GFAHGPPRNG SNIPVNQTVA  240
IMPVSATGVP GPPTNLNIGM DYWSSHGNVS AAVPGVVVDG SQSQPWLQDE RELKRQRRKQ  300
SNRESARRSR LRKQAECDEL AQRAEVLNGE NSTLRAEINK LKSQYEELLA ENSSLKNKFS  360
SVPSLEGVDL DKNEQEPQKS ARQDVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306312RRSRLRK
2306313RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3359s0141.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0041470.0BT004147.1 Arabidopsis thaliana clone RAFL16-02-K13 (R50047) putative G-Box binding protein (At1g32150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174494.20.0basic region/leucine zipper transcription factor 68
SwissprotQ84LG20.0BZP68_ARATH; bZIP transcription factor 68
TrEMBLV4MPP30.0V4MPP3_EUTSA; Uncharacterized protein
STRINGBostr.3359s0141.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.10.0basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]