PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3595s0001.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 388aa    MW: 43559.1 Da    PI: 6.3321
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3595s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-083050526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         +C f+++ G+C+yG+rC++ H+
  Bostr.3595s0001.1.p 30 ICTFYQK-GICSYGSRCRYEHV 50
                         7******.***********997 PP
2zf-CCCH19.61.6e-06125147326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C+ +a+ G C++Gd C+ +Hg
  Bostr.3595s0001.1.p 125 QPICS-YAAAGDCPRGDECPHIHG 147
                          68999.*************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.357124IPR000571Zinc finger, CCCH-type
SMARTSM003560.41123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7272552IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-42751IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-52749IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-43049IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-63050IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549122149IPR000571Zinc finger, CCCH-type
SMARTSM003560.019123148IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.53E-13180255No hitNo description
Gene3DG3DSA:3.30.40.109.3E-10184250IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00111190250No hitNo description
PfamPF000974.5E-7191248IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001845.5E-7191248IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.342191249IPR001841Zinc finger, RING-type
PROSITE patternPS005180215224IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.099278306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347278307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
ILCKFFAHGA CLKGEHCEFS HDWKDPTNNI CTFYQKGICS YGSRCRYEHV KASRPHPSGS  60
SSSRSSPASA SNPLACAFLP GVSDRDLSPV PSSCLKPTWN LDSLHQDSLD EVNTFNPGTF  120
KPEEQPICSY AAAGDCPRGD ECPHIHGNIC PTCGKCCLHP FRPEEREEHK KVCERKQKQL  180
EALKLSQEIE CCVCLERVLS KPTPAERKFG LLTECDHAFC IACIRNWRSS SPSTGMDVNS  240
TLRACPICRK LSYFVVPSVI WFSAPEEKKE IMDNYREKLR SIDCKHFNFG DGNCPFGTSC  300
FYRHTVKPGS YAWKYHRPPP RRPRPSGSNF SDVDTLVNMI GNIISEGEYG PIGFEDTDDD  360
ELTTTDMMML LMHMDIESED SSNEDTY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3595s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9035760.0GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881767.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
RefseqXP_020881768.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1J3FGX60.0A0A1J3FGX6_NOCCA; Zinc finger CCCH domain-containing protein 69
TrEMBLA0A1J3J5L10.0A0A1J3J5L1_NOCCA; Zinc finger CCCH domain-containing protein 69
STRINGBostr.3595s0001.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-141C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]