PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3640s0042.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 519aa    MW: 56928.7 Da    PI: 7.7578
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3640s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-11173196326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++ C ++++t tCk+Gd+CkF H+
  Bostr.3640s0042.1.p 173 EKDCTHYMQTRTCKFGDSCKFDHP 196
                          678********************8 PP
2zf-CCCH34.14.5e-11222248127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C+++ +t  CkyG+rCkF+H++
  Bostr.3640s0042.1.p 222 PGEPDCPYYIKTQRCKYGSRCKFNHPR 248
                          5789*********************96 PP
3zf-CCCH375.6e-12267291327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C f+++tG Ck+G +CkF+H++
  Bostr.3640s0042.1.p 267 EPMCTFYMKTGKCKFGLTCKFHHPK 291
                          689********************96 PP
4zf-CCCH38.71.7e-12337363127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C+f+++tG CkyG++C+++H++
  Bostr.3640s0042.1.p 337 PGEVDCPFYLKTGSCKYGATCRYNHPE 363
                          57899********************96 PP
5zf-CCCH40.25.6e-13418442226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C+++++tG+Ck+G+rC+F+H+
  Bostr.3640s0042.1.p 418 GQSECDYYMKTGECKFGERCRFHHP 442
                          7899********************8 PP
6zf-CCCH40.73.9e-13475496627
                          -SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                          C+++++tGtCkyG++CkF H+p
  Bostr.3640s0042.1.p 475 CPYYMKTGTCKYGATCKFDHPP 496
                          ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.432170198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5171197IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041172197IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9173196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4176195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652221249IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-5221248IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7223248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6226250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-6227250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3264292IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4264291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6267292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5269290IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-9270291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554336364IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7336363IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10338363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5340364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4342363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047416444IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6416443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-7417446IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10418442IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-6422443IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493469497IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-6469496IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5474496IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5475494IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10475496IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAHRQLYSYA LHQPSYAAAS AVSPAPPPQP PKTGLSSLYG SSTDHYFPDT TFRFLARDGS  60
EALSNYTGTL TSSSAMYHHL PNTTASHLAY PQLLQHQEAA WPPGVEVPGA ASAVEPLPPG  120
VKRTSEALYY PTLLGAHNTI GQTEAWYTTD YFTKRPKLES TSHLPIYPQR AGEKDCTHYM  180
QTRTCKFGDS CKFDHPIWVP EGGIPDWKEA PVVPNEEYPE RPGEPDCPYY IKTQRCKYGS  240
RCKFNHPRAE AVASVENQDA LPERPSEPMC TFYMKTGKCK FGLTCKFHHP KDIQLPSSSQ  300
DNGSSEGLTS DPDATNNPHV TFTPALYHNS KGLPVRPGEV DCPFYLKTGS CKYGATCRYN  360
HPERTAFIPQ AAGINYSLLS SNAANLNLGL VTPATSLYQT LSQPTLGALS ATYPQRPGQS  420
ECDYYMKTGE CKFGERCRFH HPADRLSATT KQASQQPNVK LSLAGYPRRE GALKCPYYMK  480
TGTCKYGATC KFDHPPPGEV MAKTTSEADA AGATDTSQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3640s0042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884918.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7L0J20.0D7L0J2_ARALL; Enhancer of ag-4 1
STRINGBostr.3640s0042.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)