PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.3717s0001.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

WOX

Protein Properties

Length: 134aa MW: 15181.9 Da PI: 6.3525

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3717s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.3	4.1e-21	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +++ + +p+ ++++e+A++l ++te++V++WFqNrRa+ k+ Bostr.3717s0001.1.p 22 RHRWTPTSMQLQILENIYKEgSGTPNPRRIREIATELsehgQITEKNVYNWFQNRRARSKR 82 89***************99************************************97 PP
2	Wus_type_Homeobox	103.1	1.9e-33	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe++yk+G tPn ++i++i++eL+e+G+i++kNV++WFQNr+aR+++kq Bostr.3717s0001.1.p 21 TRHRWTPTSMQLQILENIYKEGSGTPNPRRIREIATELSEHGQITEKNVYNWFQNRRARSKRKQ 84 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.803	18	83	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.7E-16	18	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.42E-19	18	89	IPR009057	Homeodomain-like
SMART	SM00389	1.4E-13	20	87	IPR001356	Homeobox domain
CDD	cd00086	8.46E-15	22	84	No hit	No description
Pfam	PF00046	9.1E-19	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MVGGYFDPMV VASSSAHGMS TRHRWTPTSM QLQILENIYK EGSGTPNPRR IREIATELSE 60 HGQITEKNVY NWFQNRRARS KRKQPQTTTM IGQPDDAAVT TEERSYGDSG GFFESYEHIL 120 FLSPDLGIEH LFE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3717s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069251	2e-88	AC069251.5 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence.
GenBank	CP002684	2e-88	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306476.1	2e-81	WUSCHEL-related homeobox 14
Swissprot	Q9LM84	4e-73	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	R0IAB3	4e-80	R0IAB3_9BRAS; Uncharacterized protein
STRING	Bostr.3717s0001.1.p	3e-96	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-75	WUSCHEL related homeobox 14

Link Out ? help Back to Top
Phytozome	Bostr.3717s0001.1.p

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]