PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3751s0010.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HB-other
Protein Properties Length: 137aa    MW: 15935.5 Da    PI: 8.2321
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3751s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.15.2e-0720373956
                         S-HHHHHHHHHHHHHHHH CS
             Homeobox 39 LterqVkvWFqNrRakek 56
                         ++  qV vWFqNr+a+ k
  Bostr.3751s0010.1.p 20 IKSHQVAVWFQNRKARCK 37
                         5678************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000462.4E-42137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-62246IPR009057Homeodomain-like
SuperFamilySSF466893.15E-52348IPR009057Homeodomain-like
CDDcd000860.004912440No hitNo description
PfamPF021831.1E-123980IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAPNHSQDKR DDHVLIVHII KSHQVAVWFQ NRKARCKVKQ IERDYDILKA CYESLMAKQD  60
LVILENEILK SKVLNLTEKL NQTQRNFQGK LNIFKGDETM SSSTALIPLV NEDYLTDMFM  120
NDLLSLSWWV RPSNLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3751s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014666.13e-48homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1J3EYU07e-47A0A1J3EYU0_NOCCA; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1J3HX778e-47A0A1J3HX77_NOCCA; Homeobox-leucine zipper protein HAT5
STRINGBostr.3751s0010.1.p5e-97(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163821113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-20homeobox 1