PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.3751s0025.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 157aa MW: 18013.9 Da PI: 10.4518

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3751s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.7	6.2e-23	5	54	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 r++++s +++++s+R+++++KKA LS+LC+++v+vi+++++g l+++++ Bostr.3751s0025.1.p 5 RSSSYSLASTSLSNRLKTVFKKADKLSILCEVDVCVIYYGPDGGLKTWPK 54 89**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.783	1	56	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-12	13	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-14	14	88	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MRTSRSSSYS LASTSLSNRL KTVFKKADKL SILCEVDVCV IYYGPDGGLK TWPKEEEKVK 60 DMALRYSQLT EALRCKKSVN LYGFLNKKKI KALKNLNKER KTTGPKKVNG LKYPISDHYS 120 SDQVSQLIQS LELNFSKFQE RLRFVESQKH KEINRV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3751s0025.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002870726.2	2e-64	agamous-like MADS-box protein AGL75
Swissprot	Q9FIX0	1e-56	AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBL	D7MJH9	2e-68	D7MJH9_ARALL; Uncharacterized protein
STRING	Bostr.3751s0025.1.p	1e-111	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38740.1	2e-56	AGAMOUS-like 77

Link Out ? help Back to Top
Phytozome	Bostr.3751s0025.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]