PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5022s0013.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 279aa    MW: 31370.3 Da    PI: 5.2217
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5022s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-2089137355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ +l+g
  Bostr.5022s0013.1.p  89 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFKTAEEAAMAYDQAAFQLRG 137
                          9******9.**********965...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-2288146IPR016177DNA-binding domain
SMARTSM003802.5E-3888151IPR001471AP2/ERF domain
PROSITE profilePS5103222.74888145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3288146IPR001471AP2/ERF domain
PRINTSPR003675.2E-1189100IPR001471AP2/ERF domain
PfamPF008475.6E-1489137IPR001471AP2/ERF domain
CDDcd000181.11E-3289147No hitNo description
PRINTSPR003675.2E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAAIDMFTSN KDLYFNPPME TASLSFPESN ASFGFNQPNP VGLNQLTPYQ IHQIQNQLNH  60
RRSTISNLSP NPIRMKNLSP SSSKTKNLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFKT  120
AEEAAMAYDQ AAFQLRGDIA KLNFPNLRQE DINPLPSSVD AKLQAICKSL RKTEDACSVS  180
DQTEEKCSVS DKTELFLPKT ELVKMTKTAL FLPEKDNLET KDDNSLSDES QVGYSLSDIS  240
IPFLDFSDSE FEETGSFGLV KFPSVEIDWD AISKLSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2289145360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5022s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071681e-174AC007168.5 Arabidopsis thaliana chromosome 2 clone T26C19 map mi238, complete sequence.
GenBankCP0026851e-174CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640735.11e-147ethylene-responsive transcription factor ERF056
SwissprotQ9SIE41e-144ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLA0A178VW041e-142A0A178VW04_ARATH; Uncharacterized protein
STRINGBostr.5022s0013.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-136ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]