PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5022s0042.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 125aa    MW: 14602.6 Da    PI: 4.9271
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5022s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.11e-1014103383
                          EE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                          k+l++sdv ++grl lpk+ + +           +   +++++l + d  ++ s++v l+ r++ + yvl++GW+    + +LkegD + 
  Bostr.5022s0042.1.p  14 KTLSRSDVDQHGRLFLPKNQVLSVfkkmkdvtneS--LQKGIELEVLDiIENDSYSVILKSRNTTNDYVLASGWSIIKYSLDLKEGDNFK 101
                          89******************999999888777433..338889999998888*******99**************************988 PP

                          EE CS
                   B3  82 Fk 83 
                          ++
  Bostr.5022s0042.1.p 102 LY 103
                          77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-128105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-1310116No hitNo description
SuperFamilySSF1019362.09E-1410107IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-1112117IPR003340B3 DNA binding domain
PfamPF023622.1E-714104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEDFRIDGER ILSKTLSRSD VDQHGRLFLP KNQVLSVFKK MKDVTNESLQ KGIELEVLDI  60
IENDSYSVIL KSRNTTNDYV LASGWSIIKY SLDLKEGDNF KLYWDYLNYK FIILNFEYSL  120
ISFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5022s0042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070191e-116AC007019.5 Arabidopsis thaliana chromosome 2 clone F7D8 map mi238, complete sequence.
GenBankCP0026851e-116CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179783.17e-67F-box associated ubiquitination effector family protein
SwissprotQ9SJ076e-68Y2192_ARATH; Putative B3 domain-containing protein At2g21920
TrEMBLR0G1294e-64R0G129_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.5022s0042.1.p1e-83(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15428310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.11e-11B3 family protein