PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5022s0087.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 137aa    MW: 15538.8 Da    PI: 8.4509
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5022s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.28.2e-1965126259
                          --SS-EEEEEEE--TT-SS.-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsef.prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++k s +    YYrCt+a   +C+++kkv++ ++   v +++Y g+H++ 
  Bostr.5022s0087.1.p  65 NDDFTWRKYGQKTIKTSLTkDMCYYRCTYAkdqKCNATKKVQKIKDSLPVYKTIYVGQHTCA 126
                          79*************99651689******99999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.75959128IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-1959126IPR003657WRKY domain
SuperFamilySSF1182901.26E-1861126IPR003657WRKY domain
SMARTSM007748.0E-2364127IPR003657WRKY domain
PfamPF031061.2E-1865125IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MSSYIDHKSV EALLCVLNGL DNNMTHNLIL STMFLIVALI QHYKKIYGAE GLENYREDSP  60
TPHPNDDFTW RKYGQKTIKT SLTKDMCYYR CTYAKDQKCN ATKKVQKIKD SLPVYKTIYV  120
GQHTCAAAAF AVNDDT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5022s0087.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301442.17e-40probable WRKY transcription factor 64
SwissprotQ93WV73e-38WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBLD7KTR84e-39D7KTR8_ARALL; Uncharacterized protein
STRINGBostr.5022s0087.1.p8e-99(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.11e-40WRKY DNA-binding protein 67