PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5022s0092.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family SRS
Protein Properties Length: 172aa    MW: 19451.3 Da    PI: 8.7648
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5022s0092.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70292.77.6e-29662561
               DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaass 61
                         +++C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r++++q+++++ s
  Bostr.5022s0092.1.p  6 GKRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSNKHQTQTQPFS 62
                         579********************************************9887776655 PP
2DUF70282.31.2e-2572123103154
               DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                           ++P+e+ss a frcv+vss+ddg+e++aYqt+v+igGhvf+GiL+dqGl++
  Bostr.5022s0092.1.p  72 GHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQGLDK 123
                          45***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.3E-25661IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.7E-28950IPR006510Zinc finger, lateral root primordium type 1
PfamPF051421.4E-2268122IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016244.2E-3073121IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MMMIMGKRCE DCGNQAKKEC VYMRCRTCCK SKAFHCQTHI KSTWVPAYRR SNKHQTQTQP  60
FSTCVQIRTI PGHFPAELSS LADFRCVKVS SIDDGKEQYA YQTTVNIGGH VFRGILHDQG  120
LDKVMVDHHC NKNSNNYQEL LPPSTSSCPM IITSPFTDFM SGTQFSSVLR R*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5022s0092.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1637771e-154AY163777.1 Arabidopsis thaliana hypothetical protein (F3K23.16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001324104.11e-108SHI-related sequence3
RefseqNP_179735.11e-108SHI-related sequence3
SwissprotQ9SJT81e-109SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A1P8AZ481e-106A0A1P8AZ48_ARATH; SHI-related sequence3
STRINGBostr.5022s0092.1.p1e-127(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.11e-111SHI-related sequence3