PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.5022s0146.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

GeBP

Protein Properties

Length: 415aa MW: 45366 Da PI: 4.7723

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.5022s0146.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	127.6	5.3e-40	195	287	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +fqr+w+e+Deiv+LqGl+d+k++tg+sp+dd++++y+ +kksisf+vsk q++eK+r+LK+K+ +k k+ g+ep+f k+hd+k+fel Bostr.5022s0146.1.p 195 YFQRVWTEDDEIVVLQGLMDYKNDTGVSPYDDTNGVYQLLKKSISFDVSKVQFMEKLRNLKNKYVGKAKN---GEEPTFVKPHDRKAFEL 281 79***************************************************************999...************* PP DUF573 92 skkiWg 97 sk +Wg Bostr.5022s0146.1.p 282 SKLVWG 287 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.8E-31	196	287	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MSSKRVNPQE DPPTTSSSDE DEVDTSSAEK DDVSSKNPAA LKNTVVVLAA PTGKQVSDSD 60 SGSEEESDED EVDTSSEEED DVSSKNPAAL KNTVAVLAAP TGKQVSDSDS GSEEESDSDS 120 EPEKKDQVLT KPVTETKDSA VKNLDSKKVK TSEKSVGKRS RETDEGVSTD VKRVKKGSGE 180 DEKKSGGGKE TKKTYFQRVW TEDDEIVVLQ GLMDYKNDTG VSPYDDTNGV YQLLKKSISF 240 DVSKVQFMEK LRNLKNKYVG KAKNGEEPTF VKPHDRKAFE LSKLVWGANG MALESAVKSN 300 GKSSKKSSKS KKVESVKQEL DSSLPNGKNC EDEVTNKVEV SVLGDPSLVK SLARFGVDEL 360 AAQQGLIRLA SEDKKRFEEQ WKALQVREFE FYSQKSGFIH EVVTKIAEAF RSNI*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MSSKRVNPQE DPPTTSSSDE DEVDTSSAEK DDVSSKNPAA LKNTVVVLAA PTGKQVSDSD  60
SGSEEESDED EVDTSSEEED DVSSKNPAAL KNTVAVLAAP TGKQVSDSDS GSEEESDSDS  120
EPEKKDQVLT KPVTETKDSA VKNLDSKKVK TSEKSVGKRS RETDEGVSTD VKRVKKGSGE  180
DEKKSGGGKE TKKTYFQRVW TEDDEIVVLQ GLMDYKNDTG VSPYDDTNGV YQLLKKSISF  240
DVSKVQFMEK LRNLKNKYVG KAKNGEEPTF VKPHDRKAFE LSKLVWGANG MALESAVKSN  300
GKSSKKSSKS KKVESVKQEL DSSLPNGKNC EDEVTNKVEV SVLGDPSLVK SLARFGVDEL  360
AAQQGLIRLA SEDKKRFEEQ WKALQVREFE FYSQKSGFIH EVVTKIAEAF RSNI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.5022s0146.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010492929.1	1e-161	PREDICTED: probable transcription factor At1g11510
Swissprot	C0SUU6	1e-121	STKLA_ARATH; Probable transcription factor At1g11510
TrEMBL	R0I1M2	1e-140	R0I1M2_9BRAS; Uncharacterized protein
STRING	Bostr.5022s0146.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	1e-93	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bostr.5022s0146.1.p