PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0007.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 141aa    MW: 16504.8 Da    PI: 8.971
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.39.1e-2151253128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          + f F+Pt+  ++++yL+ k  + +  +++++i++v+i+    ++ +     ++  wyf+s+ + ++        +t+sgyWk+tg++++
  Bostr.5325s0007.1.p   5 ADFIFQPTNGVIIDYYLRLKHLDIEeGNVNHFIATVKICIKSKSKWN-----DNMVWYFYSRDEYNED-----IGKTSSGYWKETGSKTR 84 
                          5588**************88655542677677*******99888886.....56799**999876543.....336899*********** PP

                  NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ k    +g ++g k+ Lvf + ++p+g+k+dWvmh y+l
  Bostr.5325s0007.1.p  85 IIGKwkrtNGVKIGEKRALVFQSCENPNGSKSDWVMHVYQL 125
                          **9988888889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.5663140IPR003441NAC domain
SuperFamilySSF1019416.54E-233138IPR003441NAC domain
PfamPF023651.5E-155125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEYPADFIFQ PTNGVIIDYY LRLKHLDIEE GNVNHFIATV KICIKSKSKW NDNMVWYFYS  60
RDEYNEDIGK TSSGYWKETG SKTRIIGKWK RTNGVKIGEK RALVFQSCEN PNGSKSDWVM  120
HVYQLTFLSP DQVIFRIYNV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866671.12e-46NAC domain-containing protein 4
TrEMBLD7KB625e-64D7KB62_ARALL; Uncharacterized protein
STRINGBostr.5325s0007.1.p1e-101(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1990645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02210.12e-44NAC family protein