PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0008.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 226aa    MW: 26204 Da    PI: 6.5864
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.53.5e-2951346127
                  NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                           F+P +eel++++L++k+++++  + + i+ev+i+ +eP +Lp  +k e++  wyf s+ +k   + +r++ra ++gyWk tg+++++++
  Bostr.5325s0008.1.p   5 TFNPPEEELITYFLNNKITKNDDLVGRQITEVNICLHEPAELPGLAKIESShTWYFISPVEK-FGRLSRTKRASRTGYWKITGNSRTIKD 93 
                          7*********************888788***************6444444426777776655.67789********************** PP

                  NAM  95 kkgelvglkktLvfy........kgrapkgektdWvmheyr 127
                           +g+ +glkk Lvf         + +++k  k++W++he++
  Bostr.5325s0008.1.p  94 VDGNPIGLKKFLVFQenkrsstsSSTTSKQYKSKWIIHEFH 134
                          ***************55444433244455569********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.4171156IPR003441NAC domain
SuperFamilySSF1019417.06E-324149IPR003441NAC domain
PfamPF023651.1E-174134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSRYTFNPPE EELITYFLNN KITKNDDLVG RQITEVNICL HEPAELPGLA KIESSHTWYF  60
ISPVEKFGRL SRTKRASRTG YWKITGNSRT IKDVDGNPIG LKKFLVFQEN KRSSTSSSTT  120
SKQYKSKWII HEFHSFLHHP NKILTENKNI VKDYGGDYFN DLEELLSELH TTNWFDHSQY  180
SHQYDQFHWE CFTDITQSLE QGESSGLLLG ENGHVYGGQN TTENSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-12413421141NO APICAL MERISTEM PROTEIN
1ut4_B5e-12413421141NO APICAL MERISTEM PROTEIN
1ut7_A5e-12413421141NO APICAL MERISTEM PROTEIN
1ut7_B5e-12413421141NO APICAL MERISTEM PROTEIN
4dul_A5e-12413421141NAC domain-containing protein 19
4dul_B5e-12413421141NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0222871e-78AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBankCP0026861e-78CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511050.11e-105PREDICTED: NAC domain-containing protein 62 isoform X1
TrEMBLA0A397XHE81e-113A0A397XHE8_BRACM; Uncharacterized protein (Fragment)
STRINGBostr.5325s0008.1.p1e-168(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.11e-88NAC domain containing protein 49