PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0010.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 362aa    MW: 41269.8 Da    PI: 4.6945
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.12e-2851283127
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          +G+ F+ t+ elv +yL +k++gk+  +e +i+ev+i++++Pw+L+       + wyfFs+r++ky tg+r+nr+t sg Wk tg  + v
  Bostr.5325s0010.1.p   5 VGLGFRTTEVELVGYYLPNKIQGKTWLVEGAINEVNICDFDPWNLR------YRVWYFFSRRKNKYGTGDRRNRKTPSGKWKLTGVPTVV 88 
                          6999*********************999899**************6......468*********************************** PP

                  NAM  93 lsk......kgelvglkktLvfykgrapkgektdWvmheyr 127
                          ++        + ++g k+ L f +    +    +Wv+hey+
  Bostr.5325s0010.1.p  89 MDDlgiwcgIRGKIGHKRCLEFVNS-VTDRIDDEWVIHEYH 128
                          *998888775567**********55.555589********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.8583149IPR003441NAC domain
SuperFamilySSF1019419.94E-305149IPR003441NAC domain
PfamPF023651.2E-155128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEDYVGLGFR TTEVELVGYY LPNKIQGKTW LVEGAINEVN ICDFDPWNLR YRVWYFFSRR  60
KNKYGTGDRR NRKTPSGKWK LTGVPTVVMD DLGIWCGIRG KIGHKRCLEF VNSVTDRIDD  120
EWVIHEYHNT VVLPEYLRTT YVICRLEYKG DDMSILSAYA IDPTLSFVAN MTNSEGSVVN  180
QSRQGNSGSY NTYSDSSDMQ QSVSAYAIDP TLSFVANMTN SEGSVVNQSR DYNTYSEDDS  240
TNHGQHLNGY FNMLDKVPFS YDYYEVDPYT GQYLLIEWAF MQENRNVCIP KKPVTGHLTD  300
DSSNSDTDSM FVSDNSSGTD GVGNLIEPYH TPIDDIPSLY TIKPLHNFEE QEQPKLHLQG  360
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-13612818139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892089.11e-106NAC domain-containing protein 1
SwissprotQ0WV962e-96NAC1_ARATH; NAC domain-containing protein 1
TrEMBLD7KQC41e-105D7KQC4_ARALL; ANAC001
STRINGBostr.5325s0010.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.18e-93NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]