PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0013.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 73aa    MW: 8625.71 Da    PI: 9.4247
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.53.3e-1637158127
                  NAM  58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                          wyf+s+ + ++        +t+sgyWk+tg++++++ k    +g ++g kk Lvf + ++pkg+k+dWvmh y+
  Bostr.5325s0013.1.p   3 WYFYSRDEYNE-----DIWKTSSGYWKETGSNTPIIGKwkrtNGVKIGEKKALVFQSCENPKGSKSDWVMHVYQ 71 
                          88988875543.....3446899*************9988888889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.227173IPR003441NAC domain
SuperFamilySSF1019414.18E-16271IPR003441NAC domain
PfamPF023651.0E-9371IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MVWYFYSRDE YNEDIWKTSS GYWKETGSNT PIIGKWKRTN GVKIGEKKAL VFQSCENPKG  60
SKSDWVMHVY QPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0648793e-64AC064879.3 Arabidopsis thaliana chromosome I BAC T6A9 genomic sequence, complete sequence.
GenBankBT0293543e-64BT029354.1 Arabidopsis thaliana At1g02210 mRNA, complete cds.
GenBankCP0026843e-64CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899593e-64U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866671.13e-40NAC domain-containing protein 4
TrEMBLD7KB624e-38D7KB62_ARALL; Uncharacterized protein
STRINGBostr.5325s0013.1.p6e-48(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1990645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02210.12e-38NAC family protein