PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0014.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 171aa    MW: 19500.8 Da    PI: 9.5565
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.54.4e-2251246127
                  NAM   6 rFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                           F+P +eel+++yL++k++g++ l  +++i+ev+i+ +eP +Lp  +k e++  wyf s+ +k   + +r++ra ++g Wk tg++    
  Bostr.5325s0014.1.p   5 TFNPPEEELITYYLNNKITGNDdLVGNRHITEVNICLHEPAELPGLAKIESShTWYFISPVEK-FGRLNRTKRASRTGHWKITGNS---- 89 
                          7*******************995445567***************6444444426777777665.56789***************93.... PP

                  NAM  94 skkgelvglkktLvfy........kgrapkgektdWvmheyr 127
                                  lkk Lvf         + +a++  k++W++he++
  Bostr.5325s0014.1.p  90 -------CLKKFLVFQenkrsstsSSTASQQYKSKWIIHEFH 124
                          .......2344444442222222146677778*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.1351140IPR003441NAC domain
PfamPF023652.4E-154124IPR003441NAC domain
SuperFamilySSF1019411.31E-254132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSRYTFNPPE EELITYYLNN KITGNDDLVG NRHITEVNIC LHEPAELPGL AKIESSHTWY  60
FISPVEKFGR LNRTKRASRT GHWKITGNSC LKKFLVFQEN KRSSTSSSTA SQQYKSKWII  120
HEFHSFLHHP NKSLKQGESR GLLLGENGHV YGGQNTTENS NVGQYFKDNI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0222872e-45AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBankCP0026862e-45CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889393.16e-78NAC domain-containing protein 69
TrEMBLD7KB611e-76D7KB61_ARALL; Predicted protein
STRINGBostr.5325s0014.1.p1e-124(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.18e-71NAC domain containing protein 49