PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0018.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 235aa    MW: 26236.5 Da    PI: 8.4769
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.52.9e-2851346127
                  NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                           F+P +eel++++L++k+++++  + + i+ev+i+ +eP dLp  +k e++  wyf s+ +k   + +r++ra ++g Wk tg+++++++
  Bostr.5325s0018.1.p   5 TFNPPEEELITYFLNNKITENDDLVGRQITEVNICLHEPADLPGLAKIESShTWYFISPVEK-FGRLNRTKRASRTGHWKITGNSRTIKD 93 
                          7*********************888788***************6444444426777777665.56789********************** PP

                  NAM  95 kkgelvglkktLvfy........kgrapkgektdWvmheyr 127
                           +g+ +glkk Lvf         + +++k  k++W++he++
  Bostr.5325s0018.1.p  94 VDGNPIGLKKFLVFQenkisstpSSTTSKQYKSKWIIHEFH 134
                          ***************6666555446667777*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.5141153IPR003441NAC domain
PfamPF023656.8E-174134IPR003441NAC domain
SuperFamilySSF1019418.37E-334152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSRYTFNPPE EELITYFLNN KITENDDLVG RQITEVNICL HEPADLPGLA KIESSHTWYF  60
ISPVEKFGRL NRTKRASRTG HWKITGNSRT IKDVDGNPIG LKKFLVFQEN KISSTPSSTT  120
SKQYKSKWII HEFHSFLHHP NKDAFVLCKL KKTRRSSTVS EASPAAKDVS HILTSAPILN  180
HSQSLEQGES SGLLLGENGH VYGGQNTAEN SNDLGLGEYV VAHKLCFQAN NDQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-14415724172NAC domain-containing protein 19
3swm_B3e-14415724172NAC domain-containing protein 19
3swm_C3e-14415724172NAC domain-containing protein 19
3swm_D3e-14415724172NAC domain-containing protein 19
3swp_A3e-14415724172NAC domain-containing protein 19
3swp_B3e-14415724172NAC domain-containing protein 19
3swp_C3e-14415724172NAC domain-containing protein 19
3swp_D3e-14415724172NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0018.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0222874e-85AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBankCP0026864e-85CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511050.11e-103PREDICTED: NAC domain-containing protein 62 isoform X1
TrEMBLR0GLB41e-106R0GLB4_9BRAS; Uncharacterized protein
STRINGBostr.5325s0018.1.p1e-175(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.12e-78NAC domain containing protein 49