PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0054.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 215aa    MW: 23872.1 Da    PI: 6.8827
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.92.9e-12177202126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y   +C+++ +tG+C yGd+CkF H+
  Bostr.5325s0054.1.p 177 YQPDICKDYKETGYCGYGDSCKFLHD 202
                          67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.85E-10174208IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8176203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009176204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-13177207IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10177202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSDSGETKPS QLEESQPQPA GQESQSQHDE DSKSESSILQ NLKEVAKPDS KLYFSSGPSK  60
SSTTTNEAPE KPVFHYDSSK EIQVQNDSRA TSTLETETDF NQDARAIRER VLKKAGEALK  120
GNKKKASNEK LYTGIHEYTD HKAGFRREQT ISSEKAGGSH GPLRASAHII VSARFDYQPD  180
ICKDYKETGY CGYGDSCKFL HDRGDYKPGW QIKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-3087214113234RING finger protein 113A
5z58_M4e-3087214113234RING finger protein 113A
6ff4_t4e-3087214113234RING finger protein 113A
6ff7_t4e-3087214113234RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0054.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934190.0AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350.
GenBankAC0236280.0AC023628.3 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305264.11e-139zinc finger CCCH domain-containing protein 1
RefseqXP_023645143.11e-139zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-132C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF71e-138R0GQF7_9BRAS; Uncharacterized protein
STRINGBostr.5325s0054.1.p1e-158(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-135C3H family protein