PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0070.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 249aa    MW: 28467.4 Da    PI: 9.7825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34e-142165147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Bostr.5325s0070.1.p 21 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 65
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-171571IPR009057Homeodomain-like
PROSITE profilePS5129415.5071670IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-71971IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-181968IPR006447Myb domain, plants
SMARTSM007172.9E-112068IPR001005SANT/Myb domain
PfamPF002497.3E-122165IPR001005SANT/Myb domain
CDDcd001678.07E-92366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSFFEDPTKK IRKPYTITKS RENWTEQEHD KFLEALHLFD RDWKKIEAFV GSKTVIQIRS  60
HAQKYFLKVQ KNGTNEHLPP PRPKRKSNHP YPQKAPKCVA LTSSNALLQH DYLYSTNSQP  120
VISTAPKHGL VHCDVNTPNS VIQEKLGVPE NCCSTSSSRD KQRTPTVTET NDQESCGKPH  180
RVMPNFAEVY SFIGSVFDPK TTGHVQRLKQ MDPINLETVL LLIRNLSVNL RSPEFEEHRK  240
LISSYNAK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372110.0AJ937211.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like3 (lcl3 gene).
GenBankAY5195080.0AY519508.1 Arabidopsis thaliana MYB transcription factor (At1g01520) mRNA, complete cds.
GenBankBT0293470.0BT029347.1 Arabidopsis thaliana At1g01520 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457115.11e-169PREDICTED: protein REVEILLE 3-like
SwissprotQ6R0H01e-162RVE3_ARATH; Protein REVEILLE 3
TrEMBLR0GTE51e-168R0GTE5_9BRAS; Uncharacterized protein
STRINGBostr.5325s0070.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.11e-164MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]