PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0071.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 249aa    MW: 28453.1 Da    PI: 9.8878
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.77.1e-241762449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          n+ n qvtfskRr g++KKA+EL++LCdae+a+i+fs++gk++ +
  Bostr.5325s0071.1.p 17 TNEANLQVTFSKRRSGLFKKASELCTLCDAEIALIVFSPSGKVFSF 62
                         5899***************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.058666IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-35665IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-26776IPR002100Transcription factor, MADS-box
CDDcd002659.91E-34773No hitNo description
PRINTSPR004041.8E-21828IPR002100Transcription factor, MADS-box
PfamPF003192.7E-251662IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-212843IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-214364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRKNLGRRK VEMVKMTNEA NLQVTFSKRR SGLFKKASEL CTLCDAEIAL IVFSPSGKVF  60
SFGHPDINVL LHHSSGRILT HNNTNLDESN RKPYIQMLSD RFSEVMAEKE KEQRNKATIV  120
QNERKNKNPE NWWRNSPNEL NLSQLTCLKH VLEDLKREVD EITSQFHQKN PNYYVGSSSN  180
AAPAIINGGN ISTNQDLFDR NGMITPIHTL PFGFNVMNRT PAGYNHSQIQ NQEFKQAHPH  240
PHHGPRYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-17674170MEF2 CHIMERA
6byy_B2e-17674170MEF2 CHIMERA
6byy_C2e-17674170MEF2 CHIMERA
6byy_D2e-17674170MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0071.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171660.11e-123AGAMOUS-like 28
SwissprotQ9LMM81e-124AGL28_ARATH; Agamous-like MADS-box protein AGL28
TrEMBLA0A178WE041e-122A0A178WE04_ARATH; AGL28
STRINGBostr.5325s0071.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17507710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.11e-126AGAMOUS-like 28
Publications ? help Back to Top
  1. Cheng JZ,Zhou YP,Lv TX,Xie CP,Tian CE
    Research progress on the autonomous flowering time pathway in Arabidopsis.
    Physiol Mol Biol Plants, 2017. 23(3): p. 477-485
    [PMID:28878488]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]