PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0092.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 490aa    MW: 55663 Da    PI: 5.5318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0092.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28.3e-053463791755
                          HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          N++f+ L++++P+ +       ++K ++L  +++Y+++L+
  Bostr.5325s0092.1.p 346 NEKFSILKSMVPTvN------EVDKESVLNNTIKYLQELE 379
                          9************65......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-5017207IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.324329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-7344389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-7344388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSSTMADDVE ASRNIRLRKQ LAVAVRSLQW NYAIFWSSSP IQHGVLEWGE GYYNGDIKKR  60
KKKSYEADSK YELQRSKQLR NLYLCMLEGD TTITTTHGHG HDNDGKTSSN VMLSPDDLSD  120
EEWYFLVCMS YVFAPAQCLP GKALATDDTI WLCNAQHAET KLFTRSLLAR SASIQTVVCF  180
PYLGGVIELG VTDLIAEDPN LIQYIKDCLL ETSNPDCSEM NISEGNSKLG KLKDGNLQVW  240
SESDEGLQYK KTLSTVLRFA ANRPKRKDLA SSDSGSSFLR WKSSSVTSNT NYHQKKSNVL  300
WKILHDVPLM HSADEKKMFQ AETTGLSQCV SMEYDDDDPS DKSKENEKFS ILKSMVPTVN  360
EVDKESVLNN TIKYLQELEA RIEELECREH YFELIEETSE TEQGMVRDET HVRLMLKESE  420
VLIEVRCLYR DYIVADIMKA VSNLNMDAFS IGSHSHDGLL VLNLKAKFRG AAVTSVRMIK  480
RELKRYDLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-13152099192Transcription factor MYC3
4rqw_B9e-13152099192Transcription factor MYC3
4rs9_A9e-13152099192Transcription factor MYC3
4yz6_A9e-13152099192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0092.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501274.10.0PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLA0A087HKB20.0A0A087HKB2_ARAAL; Uncharacterized protein
STRINGBostr.5325s0092.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein