PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0124.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 255aa    MW: 28526.2 Da    PI: 6.42
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0124.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008184106123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k+F+++  L  H  +H
  Bostr.5325s0124.1.p  84 FQCKACKKVFTSHQALGGHRASH 106
                          89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-983108IPR007087Zinc finger, C2H2
SuperFamilySSF576679.68E-783106No hitNo description
PROSITE profilePS5015710.15984111IPR007087Zinc finger, C2H2
SMARTSM003550.07284106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576679.68E-7150177No hitNo description
PfamPF139129.2E-13154178IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307155177IPR007087Zinc finger, C2H2
SMARTSM003550.51155177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MNSSCIDFVM FSRGQHDEDN MSRRPWKRER SISTHNHLNL SPNEDEELAN CLVLLSNSGD  60
AHGDHKHGHG KGKTVKKQKS AQVFQCKACK KVFTSHQALG GHRASHKKVK GCFASQDKEE  120
EDEEEYKEDD DEDEDEEEDE DKSTAHIARK RSNAHECTIC HRVFSSGQAL GGHKRCHWLT  180
PSNYLRMTSL HDHHHSVGGP QPLDQPSLDL NLACQEYSVE PTAMSVGMIQ RDGGDNNHNA  240
TSSSWLKLAS GDWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0124.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0300400.0BT030040.1 Arabidopsis thaliana At1g02040 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899590.0U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889340.21e-155uncharacterized protein LOC9325404
TrEMBLD7KP491e-153D7KP49_ARALL; Uncharacterized protein
STRINGBostr.5325s0124.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-25C2H2-like zinc finger protein