PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5763s0023.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family DBB
Protein Properties Length: 252aa    MW: 27181.1 Da    PI: 4.3752
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5763s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-07436436
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                         + C+ +++  + l+C+ +  +lC +C ++ H  
  Bostr.5763s0023.1.p  4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36
                         68***************************9954 PP
2zf-B_box28.23.8e-094691342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Bostr.5763s0023.1.p 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                         689*****************************66899999*99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.438148IPR000315B-box-type zinc finger
PfamPF006431.9E-5443IPR000315B-box-type zinc finger
CDDcd000211.19E-7548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006431.9E-74691IPR000315B-box-type zinc finger
CDDcd000211.52E-84791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS DGSVKHTAVN FLDDCYFSDL  120
DGNGNREEEE EEAASWLLLP NPKTTTAATV AVTTAEEVPG DSPEMNTGQQ YLFSDPDPYL  180
DLDYGSVDPK VESLEQNSSG TDGVVPVENR AVRVPTVNEN CYELDFTGGS KGFTYAGYNC  240
TSHSVSLINF L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5763s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0697160.0AF069716.1 Arabidopsis Thaliana BAC F6A4, Chromosome IV, near 60.5 cM, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197875.31e-165zinc finger CONSTANS-like protein
SwissprotQ940T91e-166COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLC0SVQ41e-163C0SVQ4_ARATH; Uncharacterized protein At5g24930 (Fragment)
STRINGBostr.5763s0023.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-156CONSTANS-like 4