PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6251s0040.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 545aa    MW: 60684 Da    PI: 7.853
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6251s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-1875121148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEde l +av ++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Bostr.6251s0040.1.p  75 KGGWTPEEDETLRRAVDKYKGKRWKKIAEFFP-DRTEVQCLHRWQKVL 121
                          688*****************************.************986 PP
2Myb_DNA-binding61.91.3e-19127173148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd+++v++vk++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Bostr.6251s0040.1.p 127 KGPWTQEEDDKIVELVKKYGPAKWSVIAKSLP-GRIGKQCRERWHNHL 173
                          79******************************.*************97 PP
3Myb_DNA-binding51.81.9e-16179222146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++WT eE+  l +a++++G++ W+ Ia+ ++ gRt++ +k++w++
  Bostr.6251s0040.1.p 179 KDAWTIEEESALMNAHRMYGNK-WAEIAKVLP-GRTDNAIKNHWNS 222
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.82770121IPR017930Myb domain
SMARTSM007173.0E-1674123IPR001005SANT/Myb domain
PfamPF002492.1E-1675121IPR001005SANT/Myb domain
SuperFamilySSF466893.8E-1676131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2377129IPR009057Homeodomain-like
CDDcd001671.78E-1478121No hitNo description
PROSITE profilePS5129431.882122177IPR017930Myb domain
SuperFamilySSF466894.12E-32124220IPR009057Homeodomain-like
SMARTSM007173.9E-18126175IPR001005SANT/Myb domain
PfamPF002492.3E-18127173IPR001005SANT/Myb domain
CDDcd001671.09E-15129173No hitNo description
Gene3DG3DSA:1.10.10.607.7E-27130176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-23177228IPR009057Homeodomain-like
SMARTSM007171.3E-14178226IPR001005SANT/Myb domain
PROSITE profilePS5129422.586178228IPR017930Myb domain
PfamPF002498.0E-15179222IPR001005SANT/Myb domain
CDDcd001673.02E-11181224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSSSSNPAAC SPVKEEISEL KIDIQCMENK QPLAASCSSA SEGSGCFFLK SPEVATPATA  60
SPTPRRTSGP MRRAKGGWTP EEDETLRRAV DKYKGKRWKK IAEFFPDRTE VQCLHRWQKV  120
LNPELVKGPW TQEEDDKIVE LVKKYGPAKW SVIAKSLPGR IGKQCRERWH NHLNPGIRKD  180
AWTIEEESAL MNAHRMYGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLEF YLATGNLPPP  240
ATKFSVLNDI ADGDRGSKQS SATKPFKDSD SVTQTSSGNT DSNEVGRDHF DASSVLLEEV  300
AASRRIDVNE YACSPVEYKP QLPNLEPISE EVRINSKAYV ERSIQRKEEN GFGTPKHGNL  360
YYKSPLDYYF PSEADLQRIY GYECGCSPGA ASPVSLITPP CNKDSGLAAT RSPESFLREA  420
ARTFPNTPSI FRKRRKVVLA AKTDDDVVNV GVKEADQKEE SKDSSDVSPA GRESLLLETT  480
DDCRDDEKLE SNGNVFNVSP PYRLRAKRTA VIKSRQLEFT SAKEKQPDNE TKTSELASEE  540
DKPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-69742285159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-69742285159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6251s0040.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196490.0AY519649.1 Arabidopsis thaliana MYB transcription factor (At5g02320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287439.10.0transcription factor MYB3R-5
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLR0FDT20.0R0FDT2_9BRAS; Uncharacterized protein
STRINGBostr.6251s0040.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]