PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6251s0088.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 263aa    MW: 29623 Da    PI: 6.6318
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6251s0088.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-092975346
                         SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                          WT+eE +++ +a + l  +    +W +Ia+ ++ g+t  +++ r+  
  Bostr.6251s0088.1.p 29 TWTAEENKRFEKALAFLDDKdnpeSWFKIAALIP-GKTVGDVIQRYKE 75
                         5*****************99**************.**********975 PP
2Myb_DNA-binding46.96.3e-15149193347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ +++ + k++G+g+W+ Ia+   ++Rt+ q+ s+ qky
  Bostr.6251s0088.1.p 149 PWTEDEHRRFLMGLKKYGKGDWRNIAKNYVTTRTPTQVASHAQKY 193
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.9792579IPR017884SANT domain
SMARTSM007179.5E-72679IPR001005SANT/Myb domain
PfamPF002492.7E-72975IPR001005SANT/Myb domain
CDDcd001679.87E-82976No hitNo description
SuperFamilySSF466896.96E-92984IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-12141196IPR009057Homeodomain-like
PROSITE profilePS5129421.482142198IPR017930Myb domain
SuperFamilySSF466893.59E-17144197IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-18145197IPR006447Myb domain, plants
SMARTSM007172.3E-12146196IPR001005SANT/Myb domain
CDDcd001673.30E-11149194No hitNo description
PfamPF002491.1E-12149193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MMSSTMNRGI DMFSPENTNW NFQEVREATW TAEENKRFEK ALAFLDDKDN PESWFKIAAL  60
IPGKTVGDVI QRYKELEDDV SDIEAGLIPI PGYGGDASSG ANGDHFFGLE NSGNGYGYDY  120
VVGGKRSLPA MTDCFRLPIP EKERKKGVPW TEDEHRRFLM GLKKYGKGDW RNIAKNYVTT  180
RTPTQVASHA QKYFLRQLTD CKDKRRSSIH DITTVNIPDA DATTTLSPTR TNSFDVFHQP  240
NPHHSFAFAS ASSYCNAFPQ WS*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6251s0088.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195300.0AY519530.1 Arabidopsis thaliana MYB transcription factor (At5g01200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452013.11e-171PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-73DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4LJX81e-161V4LJX8_EUTSA; Uncharacterized protein
STRINGBostr.6251s0088.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-146MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]