PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6251s0101.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 880aa    MW: 97775.9 Da    PI: 9.3272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6251s0101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-085292954
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          r RR+ri ++f  L++++P  a      K++ +++L +A++Y+k L
  Bostr.6251s0101.1.p 52 ARERRHRISDRFKILQSMVPGgA------KMDTVSMLDEAIRYVKFL 92
                         699*****************966......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0974392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1248103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.50E-104996No hitNo description
SMARTSM003533.8E-124998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-114996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-65392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF525402.82E-6147217IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.9E-4187210IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.69E-14194337IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF136712.3E-12196304No hitNo description
Gene3DG3DSA:3.40.50.3001.4E-19211331IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.220.107.5E-4410467No hitNo description
SuperFamilySSF529494.51E-18472611No hitNo description
PROSITE profilePS5115412.235478657IPR002589Macro domain
SMARTSM005061.2E-4490660IPR002589Macro domain
Gene3DG3DSA:3.40.220.101.5E-15490608No hitNo description
PfamPF016612.1E-6513597IPR002589Macro domain
SuperFamilySSF541971.02E-39665843IPR011146HIT-like domain
PROSITE profilePS510849.484687796IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.103.4E-13688793IPR011146HIT-like domain
PfamPF119691.7E-26690800No hitNo description
PROSITE patternPS008920769787IPR019808Histidine triad, conserved site
PfamPF162781.3E-9805859IPR032566Aprataxin, C2HE/C2H2/C2HC zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006790Biological Processsulfur compound metabolic process
GO:0009150Biological Processpurine ribonucleotide metabolic process
GO:0046983Molecular Functionprotein dimerization activity
GO:0047627Molecular Functionadenylylsulfatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MDHFNLRSQN PGSSSTTSSS SSSFHGHKSK TENTKRSRST STLSTDPQSV AARERRHRIS  60
DRFKILQSMV PGGAKMDTVS MLDEAIRYVK FLKAQIWFHQ NMLLFINDHK ITSSCTYSPA  120
AGEFGPRLFG YDGDYAPVKE TDSQDMSLTV MDSEFPPLFD ATYSKHTRAK LTSKAFFDEF  180
TAIMAEIEAE KTKQIVVLLI GPPGSGKTTF CDTVMRSSHR PWSRICQDII NNGKAGTKAQ  240
CLKMAIDSLK EGKSVFIDRC NLDREQRSEF IKLGGPEVEV QAVVLELSAQ VCISRSVKRT  300
GHEGNLQGGR AAAVVNKMLQ SKELPKVNEG FSRIMFCYND ADVENAVNIY NKLGPMDTLP  360
SGCFGQKNSD TKSQPGIMKF FKKVTALPGA SSNRATNATR EANEKTENFR VSPAKLGSTD  420
IVPTLAFPSI STADFQFDHE KASDIIVEKA EEFLPKLGTA RLVLVDLSHR SKILSLVKAK  480
ASQKNIDSAK FFTFVGDITK LHSEGGLHCN VIANAANWRL KPGGGGVNAA IFKAAGPDLE  540
TATRVRANTL LPGKSVVVPL PSTCPLHNAE GITHVIHVLG PNMNPNRPDN LNNDYTRGCK  600
TLQEAYTSLF EGFLSVVQDQ SKLPKRSKQT ALSDSGENIK EESERNKKYR GPQDKAVTNN  660
LESGSLEDTR DSGKKMSKGW STWALALHSI AMHPERHENV VLEFSDNIVV INDQYPKARK  720
HVLVLARQES LDGLEDVRKE NLQLLQEMHN VGLKWVDRFQ NEDASLIFRL GYHSVPSMRQ  780
LHLHVISQDF ESDSLKNKKH WNSFTSSFFR DSVDVLEEIK SQGKANVASE DLLKGELRCN  840
RCRSAHPNIP KLKSHVKSCR SQFPDHLLQN NRLFARPET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lw0_A4e-9542461837231Basic helix-loop-helix, putative, expressed
5lw0_B4e-9542461837231Basic helix-loop-helix, putative, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6251s0101.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1617460.0AL161746.2 Arabidopsis thaliana DNA chromosome 5, BAC clone T10O8 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011424.10.0LOW QUALITY PROTEIN: transcription factor bHLH140
SwissprotQ9M0410.0BH140_ARATH; Transcription factor bHLH140
TrEMBLD7M7380.0D7M738_ARALL; Basic helix-loop-helix family protein
STRINGBostr.6251s0101.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM948599
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.10.0APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]