PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6758s0017.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 449aa    MW: 50361.8 Da    PI: 6.5745
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6758s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.49.5e-130414481374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse...lykalppsetseknsseelaal...... 81 
                          l++lL+++A++vs++++++aq+lL+ ls ++sp+gd+++Rl++ ft++L+ r++r+++e   +++++++ +t+e+++ ++ +++      
  Bostr.6758s0017.1.p  41 LRRLLFTAADFVSQSNFTAAQNLLSILSLNSSPYGDSTERLVHLFTKGLSVRINRQQQEqdpTAETVATCTTNEMTMGNNSTVFtssvck 130
                          689***************************************************965441226777777777776644444444566799 PP

                 GRAS  82 ...................klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTg 146
                                               +++++P+++f+hltaNqaIl+a+e++   ++Hi+D+disqGlQWp+L+qaLa+R+    ++ppslRiTg
  Bostr.6758s0017.1.p 131 eqylfrtknnnsdfescyyLWLNQLTPFIRFGHLTANQAILDATETNdtGALHILDLDISQGLQWPPLMQALAERSsnpnNPPPSLRITG 220
                          999****99999999865444*************************987899***********************988878899****** PP

                 GRAS 147 vgspesgskeeleetgerLakfAeelgvpfefnvl..vakrledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLkl 230
                          +g+    + + l++tg+rL++fA++lg++f+f++l  v+++l+ l  +++ L+++   gE++aVn+v+ lh+++++++++     ++L++
  Bostr.6758s0017.1.p 221 FGR----DVTGLNRTGDRLTRFATSLGLQFQFHTLviVEEDLAGLllQIRYLALSAvqGETIAVNCVHFLHKFFNDDGDMIG---HFLSA 303
                          ***....***************************965444554333366666665556**********************99...***** PP

                 GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                          +ksl+P++v+++e+ea+h++ sFl+rf+ea+++y+a+fdslea+lp++s+er ++E++++g+ei +vva+e +er++rh+++e W+e+++
  Bostr.6758s0017.1.p 304 IKSLNPRIVTMAEREANHGDRSFLNRFSEAVDHYVAIFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAEATERKQRHRRFEIWEEMMK 393
                          ****************************************************************************************** PP

                 GRAS 321 eaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          ++GF +vp++++a +qaklllr ++ s+gy+++  ++sl+lgW++r L+svS+W+
  Bostr.6758s0017.1.p 394 RFGFVNVPIGSFALSQAKLLLRLHYpSEGYNLQFLNNSLFLGWQNRLLFSVSSWK 448
                          ******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.59315427IPR005202Transcription factor GRAS
PfamPF035143.3E-12741448IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLTSFKSSSS SSEDATATTT ENPPPLCLGS SSAATSASHH LRRLLFTAAD FVSQSNFTAA  60
QNLLSILSLN SSPYGDSTER LVHLFTKGLS VRINRQQQEQ DPTAETVATC TTNEMTMGNN  120
STVFTSSVCK EQYLFRTKNN NSDFESCYYL WLNQLTPFIR FGHLTANQAI LDATETNDTG  180
ALHILDLDIS QGLQWPPLMQ ALAERSSNPN NPPPSLRITG FGRDVTGLNR TGDRLTRFAT  240
SLGLQFQFHT LVIVEEDLAG LLLQIRYLAL SAVQGETIAV NCVHFLHKFF NDDGDMIGHF  300
LSAIKSLNPR IVTMAEREAN HGDRSFLNRF SEAVDHYVAI FDSLEATLPP NSRERLTLEQ  360
RWFGKEILDV VAAEATERKQ RHRRFEIWEE MMKRFGFVNV PIGSFALSQA KLLLRLHYPS  420
EGYNLQFLNN SLFLGWQNRL LFSVSSWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-594944727378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6758s0017.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023280.0AC002328.2 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence.
GenBankAC0052230.0AC005223.1 Arabidopsis thaliana chromosome I BAC T5A14, complete sequence.
GenBankAY1964820.0AY196482.1 Arabidopsis thaliana lateral suppressor (LAS) mRNA, complete cds.
GenBankBT0265190.0BT026519.1 Arabidopsis thaliana At1g55580 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175954.10.0GRAS family transcription factor
SwissprotQ9ZWC50.0SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A178WEV40.0A0A178WEV4_ARATH; SCL18
STRINGBostr.6758s0017.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.10.0GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]