PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.6758s0046.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C2H2

Protein Properties

Length: 481aa MW: 55191.2 Da PI: 10.1653

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.6758s0046.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	183	207	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C +++ +nL++H+++ H Bostr.6758s0046.1.p 183 FYCKVCLFNCKSLDNLRKHLSSeeH 207 79*****************987555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01936	1.0E-13	15	149	IPR021139	NYN domain, limkain-b1-type
CDD	cd10910	3.82E-49	15	158	No hit	No description
PROSITE pattern	PS00028	0	185	207	IPR007087	Zinc finger, C2H2
Pfam	PF01936	1.3E-8	274	403	IPR021139	NYN domain, limkain-b1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MWENKSAEPE YATAPIAVWW DMEGCPIPEG YDARRVRPSL EGAFKQLGYS GPVSITAYGD 60 LRQTPDHLLR GLSSTGVAVA HTIPEVKDNR MFTDMVVWRC RNPPPATMML IFNRVEEVFS 120 DTLVRVLQRR KYNLFLAYSY RPYKMSALVT SAEWLWESLL AVSETRRHFL QKCSERGEST 180 EMFYCKVCLF NCKSLDNLRK HLSSEEHARE EGGIHASIRE ITHIREYWQK LRPGGSSSSK 240 LKKRKKGDGV LGGVAKKKKK LEEDDSFVVN HDQTNVWWDL ENVGLPKRYP AERVHEFIVK 300 NLAEKGFTGS VNVTAVVAYK DSFVPRGLLN IQIDIIKKFN RPRNSKNDQT AYDGIRARVE 360 KWLENGPQPQ NVMLITGDNG FADLFANVKA AGHTTMVVFQ KNVGQPWSSV AIKESAHVYW 420 DDWRSFLSLP SKKVEEEMRA AENKRLAKEK KQRYRIRMSE KRKRKKERKR VESAASGSRP 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MWENKSAEPE YATAPIAVWW DMEGCPIPEG YDARRVRPSL EGAFKQLGYS GPVSITAYGD  60
LRQTPDHLLR GLSSTGVAVA HTIPEVKDNR MFTDMVVWRC RNPPPATMML IFNRVEEVFS  120
DTLVRVLQRR KYNLFLAYSY RPYKMSALVT SAEWLWESLL AVSETRRHFL QKCSERGEST  180
EMFYCKVCLF NCKSLDNLRK HLSSEEHARE EGGIHASIRE ITHIREYWQK LRPGGSSSSK  240
LKKRKKGDGV LGGVAKKKKK LEEDDSFVVN HDQTNVWWDL ENVGLPKRYP AERVHEFIVK  300
NLAEKGFTGS VNVTAVVAYK DSFVPRGLLN IQIDIIKKFN RPRNSKNDQT AYDGIRARVE  360
KWLENGPQPQ NVMLITGDNG FADLFANVKA AGHTTMVVFQ KNVGQPWSSV AIKESAHVYW  420
DDWRSFLSLP SKKVEEEMRA AENKRLAKEK KQRYRIRMSE KRKRKKERKR VESAASGSRP  480
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	259	RKKGDGVLGGVAKKKKK
2	452	465	RYRIRMSEKRKRKK
3	460	468	KRKRKKERK
4	461	465	RKRKK
5	461	466	RKRKKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.6758s0046.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL162651	6e-70	AL162651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9.
GenBank	CP002686	6e-70	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Bostr.6758s0046.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1032	4	4

Link Out ? help Back to Top
Phytozome	Bostr.6758s0046.1.p