PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6758s0055.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 256aa    MW: 28410.9 Da    PI: 7.9858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6758s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.55.9e-3257854128
                  NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + k+wyf+s+rd+kyatg r+nrat++gyWkatgkd+++ + kg+lvg++ktLvfy+grap+g+ktdWvmhe+r+
  Bostr.6758s0055.1.p   5 GGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAIQR-KGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRI 78 
                          5689***********************************99.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.231104IPR003441NAC domain
SuperFamilySSF1019414.32E-383105IPR003441NAC domain
PfamPF023659.1E-15878IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MACVGGKDWY FYSQRDRKYA TGLRTNRATA TGYWKATGKD RAIQRKGKLV GMRKTLVFYQ  60
GRAPRGRKTD WVMHEFRIQG SYQPPDHSLS SPKEDWVLCR VFHKNTEGVI CRDNTGSCFD  120
ETASASLPPL MDPYINFDQE PSSYLSDDQH FIINEHVPCF SNLSQNQTLN LTNSVSELKP  180
PCKNPNPLFT GASTPATLTG LDSFCSSDQM VLRALLSQLT KIDGGLGTKE SQNYGEGSSE  240
SLLTDIGIPS TAWNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-33210669170NAC domain-containing protein 19
3swm_B7e-33210669170NAC domain-containing protein 19
3swm_C7e-33210669170NAC domain-containing protein 19
3swm_D7e-33210669170NAC domain-containing protein 19
3swp_A7e-33210669170NAC domain-containing protein 19
3swp_B7e-33210669170NAC domain-containing protein 19
3swp_C7e-33210669170NAC domain-containing protein 19
3swp_D7e-33210669170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6758s0055.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1980540.0AF198054.1 Arabidopsis thaliana NAC1 (NAC1) mRNA, complete cds.
GenBankAK2283470.0AK228347.1 Arabidopsis thaliana mRNA for NAC1, complete cds, clone: RAFL14-76-M12.
GenBankAY0859960.0AY085996.1 Arabidopsis thaliana clone 205648 mRNA, complete sequence.
GenBankBT0058730.0BT005873.1 Arabidopsis thaliana At1g56010 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501232.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ84TE61e-179NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLR0GNI11e-180R0GNI1_9BRAS; Uncharacterized protein
STRINGBostr.6758s0055.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.11e-170NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]