PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6864s0133.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 1306aa    MW: 143256 Da    PI: 7.1203
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6864s0133.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.6e-0612841305426
                           ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                           ++C+ f+++G+Ck G++C+F H+
  Bostr.6864s0133.1.p 1284 KICK-FYESGYCKKGASCSFWHP 1305
                           6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.6E-7107167IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.54E-7108164IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.591112178IPR019787Zinc finger, PHD-finger
CDDcd155686.17E-19114159No hitNo description
SMARTSM002499.1E-7114160IPR001965Zinc finger, PHD-type
PROSITE patternPS013590115175IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.104.3E-24318401IPR003121SWIB/MDM2 domain
SuperFamilySSF475923.27E-21318397IPR003121SWIB/MDM2 domain
SMARTSM001513.2E-4319401IPR019835SWIB domain
PfamPF022012.1E-13325396IPR003121SWIB/MDM2 domain
SMARTSM007199.9E-47455565IPR004343Plus-3 domain
PROSITE profilePS5136018.873455588IPR004343Plus-3 domain
SuperFamilySSF1590426.8E-26456584IPR004343Plus-3 domain
PfamPF031261.1E-17460563IPR004343Plus-3 domain
SuperFamilySSF552772.88E-16728784IPR003169GYF domain
CDDcd000725.85E-20731788No hitNo description
PROSITE profilePS5082915.702731785IPR003169GYF domain
SMARTSM004449.7E-16732787IPR003169GYF domain
PfamPF022138.8E-12733777IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.5E-17733785IPR003169GYF domain
SuperFamilySSF902294.97E-612801304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.11712801305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-412841304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1306 aa     Download sequence    Send to blast
MENQQKQLQQ GVPELASLAG REESSVRGID LMRVDQCEEI GVNQVPALSV PASTVAETVA  60
VPVSIEQVVK VVDEVAPVKR KRGRPPRAQA KTPLNTRPPP PPPPPRKDDK EEDVCFICFD  120
GGDLVLCDRR NCPKAYHPAC IKRDEAFFRT TAKWNCGWHI CGTCQKASSY MCYTCTFSVC  180
KRCIKDADYV IVRGNMGLCG TCIKPIMLIE NIAQGDNEAV KVDFDDKLSW EYLFKVYWLC  240
LKEDLSLTVD ELTRANNPWK EVSNTAPKVE SRNDPTNNRV LDVAVNGTKR RRTSDSPTLP  300
GKLDGKKPNN IIKKAPGDTC WATKELLEFV SFMKNGDTSV LSQFDVQGLL LDYIKKKNLR  360
DPLQKSQVLC DLMLVKLFGK QRVGHFEMLK LLESHFLIQE KPKGDKTTNG ETTHAVPSQI  420
EEDSVHDPTV RDRRRKMRRK TDGRVQNENR DAYAAIDVHN INLIYLRRKY LESLLDDINK  480
VHEKVVGTIL RIKVSGSDQK LDIHRLVQVV GTSKATASYQ LGAKTTDVML EILNLDKREV  540
ISIDQLSDQN VTEDECKRLR QSIKCGLNKR LTVGDILKTA ATLQAMRINE ALEAEILKLN  600
HLRDRASEKG HRKELRECVE KLELLKSPEE RQRLLQEVPE VHTDPSMDPS HASSEDAGLG  660
TRKQDNHIKA QSKGPHKKGV ILNNVGNNAQ KKYDAPILRS RNAVHGDKDD CSKVHNNSSN  720
IQETGKDDEE SEIWHYRDPT GKTQGPFSMV QLRRWKSSGH FPPYLRIWKA HENQDESVLL  780
TDALAGRFDK ATTLPSSSSL PQELKPSPHD SGCTGMDVNC LQKNHTPVNT SATSSSSSTV  840
SSSSLPNDPK EKQVVALVAC SGKVEDGNSV CPQPQVSCPA SMSVVPGHVV TPDIRETPGS  900
VLSNAVRADG NHSKTKTVED GLNGGSVSIN GSVHAPNLNQ ESHFLDFPSP TPKSSPEDLE  960
AQAAETIQSL SSCVLVKGPS GVTWSTTTTT TTDAATTTTS VVVTGGQLPQ VTQQNAVVLA  1020
APSVKPNDLA ADHATTTQTS DNTHVAHSSG WPAIVADPDE CDESVSDLLA EVEAMEQNGL  1080
PSSPTSTFHC DDDDDLTKGP EKDFFNPVVR MSLTPETCRM DVSQASSLDN VSAGKSSMGT  1140
EAKENTPFSH CGTAGPELLL FAPPAPAPAS ISRDLTLTTT ALRLGSETSV EAGPVVERLP  1200
KSGSELSPRS LSSHDSARGN TERSPRGSQQ KRSSGHSRDR QWLNNGYNTS VNNSHNNRQW  1260
SYSNSHGYDH GSGSYAAHPP KGLKICKFYE SGYCKKGASC SFWHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A3e-131121811581Histone-lysine N-methyltransferase NSD3
4gnd_C3e-131121811581Histone-lysine N-methyltransferase NSD3
4gne_A3e-131121811581Histone-lysine N-methyltransferase NSD3
4gnf_A3e-131121811581Histone-lysine N-methyltransferase NSD3
4gng_A3e-131121811581Histone-lysine N-methyltransferase NSD3
4gng_D3e-131121811581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6864s0133.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880063.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLR0HHW80.0R0HHW8_9BRAS; Uncharacterized protein
STRINGBostr.6864s0133.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding