PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6864s0157.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ZF-HD
Protein Properties Length: 259aa    MW: 29544.9 Da    PI: 10.407
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6864s0157.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.76.4e-2963117358
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                          +++Y+eC+kNhAas+Gg++vDGC+Efm+  geegt  alkCaAC+CHR+FHR+ev 
  Bostr.6864s0157.1.p  63 AAKYRECQKNHAASTGGYVVDGCCEFMAG-GEEGTRGALKCAACNCHRSFHRKEVY 117
                          689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-2764116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.7E-2565116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2465116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.13466115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.4E-26183252IPR009057Homeodomain-like
SuperFamilySSF466891.91E-17185252IPR009057Homeodomain-like
PROSITE profilePS500719.021189253IPR001356Homeobox domain
TIGRFAMsTIGR015656.5E-26192248IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MELGGKGNAI TSTTMISTKT LEVKPHTKPY PDPEAKPESD PSTIALFPIK KENQKLRTRV  60
DQAAKYRECQ KNHAASTGGY VVDGCCEFMA GGEEGTRGAL KCAACNCHRS FHRKEVYGHR  120
SSKQDQLMIT PAFYSSNSSY KPMQPRAMHP TVEIGGRTSS SSEDMKKILS HRNQNVDGKG  180
LMMMMTRKKK SKRVRTKINE EQKEKMKEFA ERLGWRMQKK DEEEINKFCR MVNLRRQVFK  240
VWMHNNKQAM KRNSNTSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-181912491775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6864s0157.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1756490.0AK175649.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-13-N07.
GenBankAL0498620.0AL049862.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881625.11e-156zinc-finger homeodomain protein 7
SwissprotQ9SVL01e-150ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLD7LTK41e-150D7LTK4_ARALL; ATHB28
STRINGBostr.6864s0157.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-150homeobox protein 28